Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 102 7e-17
seq7336 95.1 1e-14
>seq1039
Length=57342
Score = 102 bits (112), Expect = 7e-17
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
||| || || |||||||| || ||||| | |||| ||||||| | ||| |||||
Sbjct 42673 CGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACC 42732
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
||| | || | |||||||||||| || || | ||||| ||||| |||||| ||
Sbjct 42733 AGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTCGCCTT 42792
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| | || | | || ||| ||||||||| || ||||| | ||||| || |||||
Sbjct 42793 TACATTCTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTTAGAGT 42852
Query 27230 TTTCACAAAGATTTGCATA 27248
|| |||||||||||||||
Sbjct 42853 CTTGACAAAGATTTGCATA 42871
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || |||| || | |||| || | || || || |||||||| |||||||||
Sbjct 49373 TGCCACCACGCAGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGG 49314
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| |||| | ||||| | |||||| || || | || | |||||| |||||||| |
Sbjct 49313 AAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTG 49254
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | |||||| || || |||||| |||| | | || | | || | | ||||
Sbjct 49253 GGATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAA 49194
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || || || |||| || || || || || ||||| |||||||||||
Sbjct 49193 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145
>seq7336
Length=62802
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || ||||||||||| |||||| | | | ||| |||| || | ||| ||||||
Sbjct 18577 GTTGACTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCG 18636
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || || || |||||||| || || | |||||||| || ||| || |||
Sbjct 18637 GCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTT 18696
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | | || | | ||||| || || ||||| | ||| || || |||||
Sbjct 18697 ACGTTCTCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTC 18756
Query 27231 TTCACAAAGATTTGCAT 27247
|| ||||| ||||||||
Sbjct 18757 TTAACAAAAATTTGCAT 18773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424866396021672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |