Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11759 109 6e-19 seq5605 87.8 2e-12 >seq11759 Length=791511 Score = 109 bits (120), Expect = 6e-19 Identities = 174/246 (71%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || ||| | ||||| ||||| | |||||| || ||||| || |||||||| | | | Sbjct 466317 CTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGG 466258 Query 94774 TGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 94830 ||| ||| ||| |||| | | ||| || ||||| || | || || || ||| Sbjct 466257 TGGATTGCAAATAAAAAGGCAC---CCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTT 466201 Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 94889 || || | ||||| |||||||| || ||| | |||| |||||||||||||| ||||| Sbjct 466200 GAAGGCGTATTCTTTTCTGGTTCATT-TGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCT 466142 Query 94890 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 94949 |||||| || ||| ||| || ||||| ||| ||| ||||| || |||||| || Sbjct 466141 CATGCCTGGCCTCACCTTTAGTAATGAGCTGATCAGTCGAGACGAAGGCCTCCACACGGA 466082 Query 94950 GTTTGC 94955 ||||| Sbjct 466081 TTTTGC 466076 >seq5605 Length=468275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 169349 TTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT 169408 || || || ||||||||||| || ||| | ||||| ||||| || |||||| || || Sbjct 239958 TTACCGCGCAGAGGGAAGACGCCATAGCGGTCACGTCCAACCACTCCGAGACCGGCCACG 240017 Query 169409 GCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATT--TTCCAGATTGTG 169466 || |||| ||| |||||||| ||||| |||| |||||| || || | | | || | | Sbjct 240018 GCAAGAGACTTGGCCGAGTCTCCCTCTGTGAGGATGAGGGTGCAGTGCTGCGAGTTCCT- 240076 Query 169467 CCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAATTTTGG 169517 || || || | ||| ||||| |||| || ||||| || | | ||||| Sbjct 240077 -TGTCCCTGCATCGTTGGCATCGTCCAGCTTTGGAATCCCCTTTAATTTGG 240126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583165065030440