Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11759 123 3e-23 >seq11759 Length=791511 Score = 123 bits (136), Expect = 3e-23 Identities = 370/565 (65%), Gaps = 11/565 (2%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||| ||| | |||| | || ||||||||| | | || |||||| | || ||||| Sbjct 466635 TACCATGATATTTGGGAGTTCTACAAGAAAGCGGTTGCCTCTTTCTGGACGGTTGAGGAA 466576 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 |||| || || || || | || ||||| | || ||| | | ||| | || ||| Sbjct 466575 GTTGATCTAGCGAAGGATCTCACTGACTGGGAAAGCCTTAATGATGGCGAACGTCACTTC 466516 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 || | ||| |||| |||||||| || |||||||| || || | |||||| || Sbjct 466515 ATTTCGTATGTCTTGGCTTTCTTCGCAGCCAGTGATGGCATCGTTAATGAAAATCTAACT 466456 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--AGT 59811 |||| |||| || || || || ||| ||||||| || | || || | | || ||| Sbjct 466455 TTGAATTTTTGTAACGAGGTTCAAATTCCCGAGGCTCGTTGTTTTTATG-GAATGCAAGT 466397 Query 59812 CGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGG 59871 || | ||| || || || || | |||||| || ||||||||| | ||||||| Sbjct 466396 CGC-CGTCGAAAACATTCATTCTGAAATGTACTCTCTTCTGATCGATACCTACGTCAAGG 466338 Query 59872 ATCCGGAAGAGAAGGC--TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACA 59929 |||| || ||| || |||||| ||||| | |||| || ||| | Sbjct 466337 ATCC--AATGGAACGCGACTTTCTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAA 466280 Query 59930 AAAAGCAGAATGGGCCATGCAGTGGAT---GAGTCCTGGAGCATCATTTGCACAACGTCT 59986 || || || ||||| | |||||| | | ||| | | || | ||||| Sbjct 466279 GAAGGCCGATTGGGCGCTTAGGTGGATTGCAAATAAAAAGGCACCCTACGCCGAGCGTCT 466220 Query 59987 CATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 | || || || ||| ||||| | ||||| ||||| || || | | |||||||| Sbjct 466219 GGTGGCGTTCGCTGCCGTTGAAGGCGTATTCTTTTCTGGTTCATTTGCTTCCATTTTCTG 466160 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 |||||| |||||||| |||||||| ||||| | || || |||||||| || || Sbjct 466159 GCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAATGAGCTGATCAGTCGAGA 466100 Query 60107 CGAGGGCCTCCATCAGGAGTTTGCA 60131 ||| |||||||| ||| |||||| Sbjct 466099 CGAAGGCCTCCACACGGATTTTGCA 466075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548434766510640