Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1473 122 1e-22 seq11759 111 2e-19 seq5605 100 3e-16 >seq1473 Length=538379 Score = 122 bits (134), Expect = 1e-22 Identities = 350/530 (66%), Gaps = 10/530 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACAC 53232 |||| ||||||||| | || ||||||||| | | ||||| || ||||| || | || Sbjct 273973 GAGAGGCCTCAGTACATGTTTATGCGCGTCTCGATAGGTATTCATGGTGAAGATGTGGAC 274032 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || |||||| || | ||||| |||||| || | |||||| | || || Sbjct 274033 GC-TGCTATTGAGACCTATAATCTAATGTCTGAAAAGTGGTTGATTCACGCCTCACCCAC 274091 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || || || ||||| ||| | ||||||||||||| ||||| || || | | ||||| Sbjct 274092 TCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCCAGCTGTTTTTTGCTTACAATGAA 274151 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 || ||| ||||| || || || || |||||||| | ||||| | ||||| || Sbjct 274152 AGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAA 274211 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAA--CGGCACAC--CAATCA 53468 ||||||| |||||| | || || || || | | | |||| | | || ||| Sbjct 274212 CGCGGGTGGGATCGGTCT-CAATGTTC--AC-TGCATCCGAAGCAAGAATACGTTTATCG 274267 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || || || | || | || | || || ||||| || |||||||||| ||| | Sbjct 274268 CTGGAACCAATGGGGAGTCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCACCG 274327 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | || || ||| | ||||| || || || || | || |||||||| ||||| | Sbjct 274328 CTCGTTATGTCGATCAGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCGAAC 274387 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 | ||||| | || | || ||||| | ||| | || ||| || | || |||| Sbjct 274388 CATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAGGAGA 274447 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | ||| || || || || || || ||| |||| || || |||||| Sbjct 274448 TTCGCGCTCGGGATCTCTTCCTCGCACTTTGGGTTCCCGATCTATTCATG 274497 >seq11759 Length=791511 Score = 111 bits (122), Expect = 2e-19 Identities = 363/556 (65%), Gaps = 11/556 (2%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| |||| || |||| ||||| ||| | ||||||||||| || |||||||| Sbjct 466093 GCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTT 466152 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| || |||| | || |||||| ||||| | |||||| || || || Sbjct 466153 CTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAA 466212 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC---ATCCAAGTCTGAGCCCATTC 74944 || || || || | ||| | ||||| | | | ||||| | | ||||| || Sbjct 466213 CGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATC 466272 Query 74945 AGCTTTTCGTTTGACCGCAGGGACA-GTATCGATCGCTTGGAAGAGGC--TTGCCTTCTC 75001 || || | | | | || || | || | || || | || || | || ||| Sbjct 466273 GGCCTT-CTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCA 466331 Query 75002 TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 || |||||||||||| | || |||| ||| |||||| | || |||||||| || Sbjct 466332 TT--GGATCCTTGACGTAGGTATCGATCAGAAGAGAGTACATTTCAGAATGAATGTTTTC 466389 Query 75062 GTTGAACGACTGGTACGCG-TAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAA 75120 | | ||||| | | | || ||| | || ||||| | ||| || || || || ||| Sbjct 466390 GACGG-CGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTGAACCTCGTTACAAA 466448 Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 |||||| | ||| || | |||||||| || ||| ||||| ||||||| || Sbjct 466449 AATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGCGAAGAAAGCCAAGACAT 466508 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCA 75240 || ||||| || || | ||| | || | ||||| || | || ||| ||| | Sbjct 466509 ACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTA 466568 Query 75241 AATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGT 75300 ||||| ||||| |||||||||||| ||| ||| || ||||| || ||| | | Sbjct 466569 GATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATAT 466628 Query 75301 CAGGGTAATTGATTGG 75316 || |||| | ||| || Sbjct 466629 CATGGTATTGGATGGG 466644 >seq5605 Length=468275 Score = 100 bits (110), Expect = 3e-16 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 117300 GGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGA 117359 |||| || ||||| ||||| | |||| |||||||||||| || ||||||||||||| Sbjct 236008 GGCG-GTAAAAATATAACGGGCAGAAGCAGAATCCTTGCCACCGGCGAGACGCGTACCGA 236066 Query 117360 ATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT 117419 | || ||| ||| ||| || || |||||||||| || ||||||| ||||||| Sbjct 236067 ACTGACCATAAGGCATCAACAGATTGAGGTTGTTGGAACCTACAAAGTCCTGAGCCAGCC 236126 Query 117420 TGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGT 117479 | || || || |||| | |||| |||||||| || | | | ||| |||||| Sbjct 236127 CAATGATAGTGCCCATGAGGGACACCTCGCCATGGTGGTAGGAGGACATCTCTGCCACG- 236185 Query 117480 AGC-CCGC-CAGCTGAGCCACCTTCATGTC 117507 || |||| | |||||||||||| || || Sbjct 236186 -GCACCGCATAACTGAGCCACCTTAATCTC 236214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547126181333800