Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1039 107 1e-18 seq7336 95.1 8e-15 >seq1039 Length=57342 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | |||||| || ||||||||||||||| || || || Sbjct 42872 CCACCACGAAGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAC 42931 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || || ||||| || | || || |||||||| || Sbjct 42932 AGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGA 42991 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | || || | ||||||||| | ||||| Sbjct 42992 ATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCAC 43050 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| ||||||| || ||||||||||| ||||| Sbjct 43051 CTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098 Score = 100 bits (110), Expect = 2e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || ||||||||||||||| || || ||||| || || Sbjct 49362 AGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGA 49303 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| || ||||| || |||||||| || ||||| || | |||||| Sbjct 49302 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCC 49243 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || ||| | ||| | || ||| || || | ||| Sbjct 49242 TTGTCT-TGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGT 49184 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || ||||| | ||| ||||| || || |||||| ||| Sbjct 49183 GATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCATGATGA 49140 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||||||||||||||| || ||||| || || ||||||| | || ||||| || || Sbjct 42679 CTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 42738 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || ||||||||||| || || || | |||||||| || |||||| |||| Sbjct 42739 GATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTCGCCTTTACATT 42798 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| | || | || ||||||| ||||| || || ||||||| || || || Sbjct 42799 CTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 42858 Query 34695 AAAAATCTGCAT 34706 ||| || ||||| Sbjct 42859 AAAGATTTGCAT 42870 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||||||||| ||||| ||||||||||||||| || || || Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || || ||||| || || || |||||||| || || Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | |||||||||||| ||| |||| || || | || | ||| ||| ||||| Sbjct 49479 ATGCCCTCCTTGTCT-TGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCG-GCTCCA 49422 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| || || || || || || | || ||||| || || |||||| Sbjct 49421 CCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 49372 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| ||||| ||||| || || | ||||| | || || || ||||| Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || || |||||||| || || | |||||||||||| ||| || | || || | Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATT 41658 Query 34636 -AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 |||| ||| ||| |||||| |||| || || || || || |||| ||| |||| Sbjct 41659 CTCTATTGAGTCACTCG-GCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCA 41717 Query 34694 CAAAAATCTGCATG 34707 |||| ||||||||| Sbjct 41718 CAAATATCTGCATG 41731 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| |||||| || || || |||||| |||||||| || || || | || || | Sbjct 41743 ACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACC 41802 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || || || || || || || || || || || ||||| || || | |||||||| Sbjct 41803 ATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTT 41862 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTT 34668 |||| |||| || | || || | |||| ||| ||| |||||| |||| || Sbjct 41863 GTCTTGGATC-TTCGCCTTCACATTCTCTATTGAGTCACTCG-GCTCCACCTCCAGCGTA 41920 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || |||| ||| |||||||| ||||||||| Sbjct 41921 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 41959 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| |||||| || || || |||||| |||||||| || || || | || || | Sbjct 41971 ACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACC 42030 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || || || || || || || || || || || ||||| || || | |||||||| Sbjct 42031 ATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTT 42090 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTT 34668 |||| |||| || | || || | |||| ||| ||| |||||| |||| || Sbjct 42091 GTCTTGGATC-TTCGCCTTCACATTCTCTATTGAGTCACTCG-GCTCCACCTCCAGCGTA 42148 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || |||| ||| |||||||| ||||||||| Sbjct 42149 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 42187 >seq7336 Length=62802 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || |||||||||||| ||||| || || || || ||| |||| || | || Sbjct 18570 ATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTG 18629 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 |||||||| || || | || ||||| || || || | |||||| |||||| ||| || Sbjct 18630 CTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGAT-TT 18688 Query 34623 TTGTTTTAACGATAAAATTG---TGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACC 34679 ||| ||| ||| | || | ||| | ||| || || | |||||| ||||| || Sbjct 18689 TTGCTTTTACGTTCTCGATGGAATCACTTGG--CTCAACCTCAAGGGTTATGGTTTTTCC 18746 Query 34680 GGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| ||||| Sbjct 18747 AGTGAGAGTCTTAACAAAAATTTGCAT 18773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314679232543523