Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 107 1e-18
seq7336 95.1 8e-15
>seq1039
Length=57342
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | ||| | |||||| || ||||||||||||||| || || ||
Sbjct 42872 CCACCACGAAGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAC 42931
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| | || || || ||||| || | || || |||||||| ||
Sbjct 42932 AGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGA 42991
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| ||| || | || || | ||||||||| | |||||
Sbjct 42992 ATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCAC 43050
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || ||||| ||||||| || ||||||||||| |||||
Sbjct 43051 CTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 100 bits (110), Expect = 2e-16
Identities = 158/224 (71%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || || ||||||||||||||| || || ||||| || ||
Sbjct 49362 AGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGA 49303
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | ||||| || ||||| || |||||||| || ||||| || | ||||||
Sbjct 49302 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCC 49243
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| || | || ||| | ||| | || ||| || || | |||
Sbjct 49242 TTGTCT-TGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGT 49184
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
|| || || ||||| | ||| ||||| || || |||||| |||
Sbjct 49183 GATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCATGATGA 49140
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||||||||||||||| || ||||| || || ||||||| | || ||||| || ||
Sbjct 42679 CTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 42738
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| ||||||||||| || || || | |||||||| || |||||| ||||
Sbjct 42739 GATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTCGCCTTTACATT 42798
Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694
||| | || | || ||||||| ||||| || || ||||||| || || ||
Sbjct 42799 CTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 42858
Query 34695 AAAAATCTGCAT 34706
||| || |||||
Sbjct 42859 AAAGATTTGCAT 42870
Score = 95.1 bits (104), Expect = 8e-15
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | || || | ||||||||| ||||| ||||||||||||||| || || ||
Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| | || || || ||||| || || || |||||||| || ||
Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657
| |||||||||||| ||| |||| || || | || | ||| ||| |||||
Sbjct 49479 ATGCCCTCCTTGTCT-TGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCG-GCTCCA 49422
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| |||| || || || || || || | || ||||| || || ||||||
Sbjct 49421 CCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 49372
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575
||||| || ||||| ||||| ||||| || || | ||||| | || || || |||||
Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599
Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635
|| || || |||||||| || || | |||||||||||| ||| || | || || |
Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATT 41658
Query 34636 -AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
|||| ||| ||| |||||| |||| || || || || || |||| ||| ||||
Sbjct 41659 CTCTATTGAGTCACTCG-GCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCA 41717
Query 34694 CAAAAATCTGCATG 34707
|||| |||||||||
Sbjct 41718 CAAATATCTGCATG 41731
Score = 93.3 bits (102), Expect = 3e-14
Identities = 155/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550
||||| |||||| || || || |||||| |||||||| || || || | || || |
Sbjct 41743 ACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACC 41802
Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610
|| || || || || || || || || || || || ||||| || || | ||||||||
Sbjct 41803 ATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTT 41862
Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTT 34668
|||| |||| || | || || | |||| ||| ||| |||||| |||| ||
Sbjct 41863 GTCTTGGATC-TTCGCCTTCACATTCTCTATTGAGTCACTCG-GCTCCACCTCCAGCGTA 41920
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || |||| ||| |||||||| |||||||||
Sbjct 41921 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 41959
Score = 93.3 bits (102), Expect = 3e-14
Identities = 155/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550
||||| |||||| || || || |||||| |||||||| || || || | || || |
Sbjct 41971 ACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACC 42030
Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610
|| || || || || || || || || || || || ||||| || || | ||||||||
Sbjct 42031 ATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTT 42090
Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTT 34668
|||| |||| || | || || | |||| ||| ||| |||||| |||| ||
Sbjct 42091 GTCTTGGATC-TTCGCCTTCACATTCTCTATTGAGTCACTCG-GCTCCACCTCCAGCGTA 42148
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || |||| ||| |||||||| |||||||||
Sbjct 42149 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 42187
>seq7336
Length=62802
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/207 (71%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
|||||| || |||||||||||| ||||| || || || || ||| |||| || | ||
Sbjct 18570 ATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTG 18629
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|||||||| || || | || ||||| || || || | |||||| |||||| ||| ||
Sbjct 18630 CTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGAT-TT 18688
Query 34623 TTGTTTTAACGATAAAATTG---TGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACC 34679
||| ||| ||| | || | ||| | ||| || || | |||||| ||||| ||
Sbjct 18689 TTGCTTTTACGTTCTCGATGGAATCACTTGG--CTCAACCTCAAGGGTTATGGTTTTTCC 18746
Query 34680 GGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || |||||||| |||||
Sbjct 18747 AGTGAGAGTCTTAACAAAAATTTGCAT 18773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314679232543523
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |