Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1039 158 1e-33 seq7336 122 8e-23 seq7187 100 2e-16 seq8132 82.4 7e-11 >seq1039 Length=57342 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| ||||| || || || ||||| || ||| ||||||| || || ||||| ||| Sbjct 49372 CATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 49431 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || ||| ||||||||||| || ||||| ||||| || || Sbjct 49432 TGACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGACCA 49491 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || || || | || ||||| || |||||||| || ||| | ||||| ||||| Sbjct 49492 ACAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAA 49551 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||||||||||||| || | |||||||| Sbjct 49552 CATTCAAAAGGAGTCAACTCTGCATTTGGT 49581 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || || || || ||| ||||||| || || ||||| ||| Sbjct 41959 CATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 41900 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| || |||| || || || || |||||||| || ||||| ||||| || || Sbjct 41899 TGACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCA 41840 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | ||| || || || | || || || ||| | ||||| ||||| Sbjct 41839 GCAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAA 41780 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| | || ||||| |||||||||| |||||||| Sbjct 41779 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 41729 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || || || || ||| ||||||| || || ||||| ||| Sbjct 42187 CATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 42128 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| || |||| || || || || |||||||| || ||||| ||||| || || Sbjct 42127 TGACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCA 42068 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | ||| || || || | || || || ||| | ||||| ||||| Sbjct 42067 GCAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAA 42008 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| | || ||||| |||||||||| |||||||| Sbjct 42007 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 41957 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || ||||| ||| |||| || || || || || || Sbjct 49144 CATGCAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAG 49203 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||||||||| || || || ||||||||||| || || || ||||| ||||| Sbjct 49204 TGATTCGATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCA 49263 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || |||||||| |||||||| || || ||||||| ||||| Sbjct 49264 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 49323 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| || | || |||| | ||| |||| |||||||| Sbjct 49324 CATTCAAAAGGAGTCAACACTTCACCTGGTGCTTCGTCTGCGTGGTGGCAT 49374 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| ||||| || || || ||||| || ||| ||||||| || || ||||| ||| Sbjct 42415 CATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 42356 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| || |||| || || || || |||||||| || ||||| ||||| || || Sbjct 42355 TGACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCA 42296 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | ||| || || || | || || || ||| | ||||| ||||| Sbjct 42295 GCAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAA 42236 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| | || ||||| |||||||||| |||||||| Sbjct 42235 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 42185 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| || || |||||| | || || | || ||||| || Sbjct 42642 ATGCAGATATTTGTTAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCAAGT 42583 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| || || || || ||||| || || ||||| ||||| || || Sbjct 42582 GACTCGATAGAGAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 42523 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || || || |||| || || ||| | || ||||||||| Sbjct 42522 CAACGATTGATTTTCGCAGGAAAGCAGCTGGAGGATGGTCGCACCTTGTCTGATTACAAC 42463 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || ||||| |||||||||| |||||||| Sbjct 42462 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 42413 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| ||||||||| | || || || ||||| ||||| Sbjct 42870 ATGCAAATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTGGAAGTTGAACCCAGT 42811 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||||||||| || || || || || || || || ||||| ||||| |||||| Sbjct 42810 GATTCGATTGAGAATGTAAAGGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 42751 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || || ||||||||| || || |||| || || ||| Sbjct 42750 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGACTATAAC 42691 Query 27168 ATTCAAAAGGAGTCGAC 27184 |||||||||||||| || Sbjct 42690 ATTCAAAAGGAGTCAAC 42674 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || || || || ||| ||||||| || || ||||| ||| Sbjct 41731 CATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 41672 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| || |||| || || || ||||||||||| || ||||| ||||| || || Sbjct 41671 TGACTCAATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCA 41612 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || || || | || ||||| || |||||||| || || |||| |||||||| Sbjct 41611 ACAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAA 41552 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || ||||| |||||| Sbjct 41551 CATCCAGAAGGAATCGACC 41533 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| |||||||| | || || || || |||||||| | Sbjct 43098 ATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGC 43039 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || ||||||||||| || ||||| ||||| || || Sbjct 43038 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 42979 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || || || || |||||||| || |||| | || || |||||| Sbjct 42978 CAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAAC 42919 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | ||| | || | || | || ||||| || Sbjct 42918 ATTCAAAAGGAGTCAACCCTCCATCTTGTGCTTCGACTTCGTGGTGGTAT 42869 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| ||||| | || || || |||||||| || Sbjct 32210 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGT 32151 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| |||| || || || ||||||||||| || ||||| ||||| || || Sbjct 32150 GATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAG 32091 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || || || || |||||||| || || | || || |||||| Sbjct 32090 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 32031 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || ||| | ||| | || | ||| | || ||||| || Sbjct 32030 ATCCAAAAGGAATCCACCCTTCATCTTGTGCTCCGTCTTCGTGGTGGAAT 31981 >seq7336 Length=62802 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || | || || ||||| || || || Sbjct 18773 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 18714 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || |||| || ||| |||||| ||||||||||| || |||||||| |||||| Sbjct 18713 GATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 18654 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||| || || || || ||| | |||| | ||||| || || Sbjct 18653 CAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTATAAT 18594 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||||||||||||| || | ||| | ||| Sbjct 18593 ATTCAAAAGGAGTCAACACTCCATCTTGTT 18564 >seq7187 Length=4100 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| ||||| | || || || |||||||| || Sbjct 842 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGT 783 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| |||| || || || ||||||||||| || ||||| ||||| || || Sbjct 782 GATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAG 723 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || || || || |||||||| || || | || || |||||| Sbjct 722 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 663 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || |||||||| || ||| | ||| | || | ||| | || || ||| Sbjct 662 ATCCAAAAGGAATCCACCCTTCATCTTGTGCTTCGTCTTCGTGGAGGC 615 >seq8132 Length=63671 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 135655 TATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAA 135714 ||||||||| |||||||| || ||||||||||| ||| || || || || ||||| Sbjct 52635 TATGTGGTCAATTTGCGGAGTCCACGATCAAGGCTGGCGAGAACGACCCGTTTTCGGCAA 52694 Query 135715 GATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 |||||||| ||||||| | || |||| ||||||||| |||| Sbjct 52695 AATTCGCTACATGAACTTCGCTGGCTGTAAGAGAAAATTTGATGT 52739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434847013581120