Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 158 1e-33
seq7336 122 8e-23
seq7187 100 2e-16
seq8132 82.4 7e-11
>seq1039
Length=57342
Score = 158 bits (174), Expect = 1e-33
Identities = 161/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| ||||| || || || ||||| || ||| ||||||| || || ||||| |||
Sbjct 49372 CATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 49431
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||||||| |||| || || ||| ||||||||||| || ||||| ||||| || ||
Sbjct 49432 TGACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGACCA 49491
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| || || || | || ||||| || |||||||| || ||| | ||||| |||||
Sbjct 49492 ACAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAA 49551
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196
||||||||||||||| || | ||||||||
Sbjct 49552 CATTCAAAAGGAGTCAACTCTGCATTTGGT 49581
Score = 150 bits (166), Expect = 2e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||||||||| || || || || || ||| ||||||| || || ||||| |||
Sbjct 41959 CATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 41900
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||||| || |||| || || || || |||||||| || ||||| ||||| || ||
Sbjct 41899 TGACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCA 41840
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| || || || | ||| || || || | || || || ||| | ||||| |||||
Sbjct 41839 GCAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAA 41780
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| ||||||||||| | || ||||| |||||||||| ||||||||
Sbjct 41779 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 41729
Score = 150 bits (166), Expect = 2e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||||||||| || || || || || ||| ||||||| || || ||||| |||
Sbjct 42187 CATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 42128
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||||| || |||| || || || || |||||||| || ||||| ||||| || ||
Sbjct 42127 TGACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCA 42068
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| || || || | ||| || || || | || || || ||| | ||||| |||||
Sbjct 42067 GCAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAA 42008
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| ||||||||||| | || ||||| |||||||||| ||||||||
Sbjct 42007 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 41957
Score = 150 bits (166), Expect = 2e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || || || || ||||| ||| |||| || || || || || ||
Sbjct 49144 CATGCAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAG 49203
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| |||||||||| || || || ||||||||||| || || || ||||| |||||
Sbjct 49204 TGATTCGATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCA 49263
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||||| || | || |||||||| |||||||| || || ||||||| |||||
Sbjct 49264 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 49323
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||||||||||||| || | || |||| | ||| |||| ||||||||
Sbjct 49324 CATTCAAAAGGAGTCAACACTTCACCTGGTGCTTCGTCTGCGTGGTGGCAT 49374
Score = 147 bits (162), Expect = 2e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| ||||| || || || ||||| || ||| ||||||| || || ||||| |||
Sbjct 42415 CATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 42356
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||||| || |||| || || || || |||||||| || ||||| ||||| || ||
Sbjct 42355 TGACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCA 42296
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| || || || | ||| || || || | || || || ||| | ||||| |||||
Sbjct 42295 GCAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAA 42236
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| ||||||||||| | || ||||| |||||||||| ||||||||
Sbjct 42235 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 42185
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| || || |||||| | || || | || ||||| ||
Sbjct 42642 ATGCAGATATTTGTTAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCAAGT 42583
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|||||||| |||| || || || || ||||| || || ||||| ||||| || ||
Sbjct 42582 GACTCGATAGAGAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 42523
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || || || | ||| || || || |||| || || ||| | || |||||||||
Sbjct 42522 CAACGATTGATTTTCGCAGGAAAGCAGCTGGAGGATGGTCGCACCTTGTCTGATTACAAC 42463
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||||||||| | || ||||| |||||||||| ||||||||
Sbjct 42462 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGCAT 42413
Score = 140 bits (154), Expect = 3e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| ||||||||| | || || || ||||| |||||
Sbjct 42870 ATGCAAATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTGGAAGTTGAACCCAGT 42811
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| |||||||||| || || || || || || || || ||||| ||||| ||||||
Sbjct 42810 GATTCGATTGAGAATGTAAAGGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 42751
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||| || || || ||||||||| || || |||| || || |||
Sbjct 42750 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGACTATAAC 42691
Query 27168 ATTCAAAAGGAGTCGAC 27184
|||||||||||||| ||
Sbjct 42690 ATTCAAAAGGAGTCAAC 42674
Score = 138 bits (152), Expect = 1e-27
Identities = 150/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||||||||| || || || || || ||| ||||||| || || ||||| |||
Sbjct 41731 CATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAG 41672
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||||| || |||| || || || ||||||||||| || ||||| ||||| || ||
Sbjct 41671 TGACTCAATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCA 41612
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| || || || | || ||||| || |||||||| || || |||| ||||||||
Sbjct 41611 ACAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAA 41552
Query 27167 CATTCAAAAGGAGTCGACC 27185
||| || ||||| ||||||
Sbjct 41551 CATCCAGAAGGAATCGACC 41533
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| |||||||| | || || || || |||||||| |
Sbjct 43098 ATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGC 43039
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || || ||||||||||| || ||||| ||||| || ||
Sbjct 43038 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 42979
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | || || || || |||||||| || |||| | || || ||||||
Sbjct 42978 CAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAAC 42919
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||||||||| ||| | ||| | || | || | || ||||| ||
Sbjct 42918 ATTCAAAAGGAGTCAACCCTCCATCTTGTGCTTCGACTTCGTGGTGGTAT 42869
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || |||| ||||| | || || || |||||||| ||
Sbjct 32210 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGT 32151
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||| |||| || || || ||||||||||| || ||||| ||||| || ||
Sbjct 32150 GATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAG 32091
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | || || || || |||||||| || || | || || ||||||
Sbjct 32090 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 32031
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| |||||||| || ||| | ||| | || | ||| | || ||||| ||
Sbjct 32030 ATCCAAAAGGAATCCACCCTTCATCTTGTGCTCCGTCTTCGTGGTGGAAT 31981
>seq7336
Length=62802
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| || || || | || || ||||| || || ||
Sbjct 18773 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 18714
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| || || |||| || ||| |||||| ||||||||||| || |||||||| ||||||
Sbjct 18713 GATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 18654
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | |||||| || || || || ||| | |||| | ||||| || ||
Sbjct 18653 CAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTATAAT 18594
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197
|||||||||||||| || | ||| | |||
Sbjct 18593 ATTCAAAAGGAGTCAACACTCCATCTTGTT 18564
>seq7187
Length=4100
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || |||| ||||| | || || || |||||||| ||
Sbjct 842 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGT 783
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||| |||| || || || ||||||||||| || ||||| ||||| || ||
Sbjct 782 GATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAG 723
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | || || || || |||||||| || || | || || ||||||
Sbjct 722 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 663
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| |||||||| || ||| | ||| | || | ||| | || || |||
Sbjct 662 ATCCAAAAGGAATCCACCCTTCATCTTGTGCTTCGTCTTCGTGGAGGC 615
>seq8132
Length=63671
Score = 82.4 bits (90), Expect = 7e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 135655 TATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAA 135714
||||||||| |||||||| || ||||||||||| ||| || || || || |||||
Sbjct 52635 TATGTGGTCAATTTGCGGAGTCCACGATCAAGGCTGGCGAGAACGACCCGTTTTCGGCAA 52694
Query 135715 GATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759
|||||||| ||||||| | || |||| ||||||||| ||||
Sbjct 52695 AATTCGCTACATGAACTTCGCTGGCTGTAAGAGAAAATTTGATGT 52739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434847013581120
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