Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq7336 105 5e-18
seq7000 102 6e-17
>seq7336
Length=62802
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||| ||||| || ||||| |||||||| || || || || ||||| | |
Sbjct 18774 AATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAG 18715
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| | | || | ||||| |||||| |||||||| || |||| ||||||||
Sbjct 18714 TGATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 18655
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| || | || || ||||| || || | || |||| || || | ||| || ||
Sbjct 18654 ACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTATAA 18595
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| ||||| ||| | ||| | ||| |||| | ||||||||
Sbjct 18594 TATTCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACTACGAGGAGG 18547
>seq7000
Length=1252665
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || ||||| || || || ||||| |||||||| || || || | |
Sbjct 319803 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAACCTTCC 319744
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || ||| ||||| || || | |||||||| ||
Sbjct 319743 GATTCTATTGAGAATGTGAAGGC-TAAGATTCAGGACAAGGAGGGGATTCCGCCAGACCA 319685
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||| | || ||||| ||||| ||| |||| || | ||| | ||| ||||||||
Sbjct 319684 ACAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAA 319625
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 319624 TATTCAGAAGGAGTCAAC 319607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337955506950548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |