Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 149 1e-30
seq7187 134 3e-26
seq7336 111 4e-19
>seq1039
Length=57342
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||||| || ||||| ||||| || || || ||||| | ||||| || | || ||
Sbjct 42877 ACGAAGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGT 42936
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | ||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 42937 CCGACCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCC 42996
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| ||||||| || || ||||| || |||||| || |
Sbjct 42997 CTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAG 43056
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| || ||||| || | ||| || | || | ||||||
Sbjct 43057 CGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || ||||| || || |||||||| ||||||| ||||| || | ||| ||
Sbjct 31989 ACGAAGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGT 32048
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| || || ||||| || ||||| ||||| || ||||| ||
Sbjct 32049 ACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCC 32108
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| ||||||| || || | || || ||||| || |
Sbjct 32109 CTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACTTCCAG 32168
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || ||||| ||||| || || | ||| | |||||
Sbjct 32169 TGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210
Score = 127 bits (140), Expect = 5e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || |||||||| || || ||||| || |||| |||||||| | | |||
Sbjct 41509 ACGAAGGCGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGT 41568
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| ||||| ||||| | |||||||||||| || ||||| ||
Sbjct 41569 ACGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCC 41628
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| ||||||| || || | ||| | ||||| || |
Sbjct 41629 CTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAG 41688
Query 225672 CGTGATCGTCTTGCCCGT 225689
||| || ||||| || ||
Sbjct 41689 CGTAATAGTCTTCCCAGT 41706
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || | ||| || || || || || || | ||||| |||| ||| || | |||||
Sbjct 42202 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATC 42261
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||||||||||| || |||||||| | |||||| ||||| || ||||| || ||||||||
Sbjct 42262 CTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 42321
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| || || | ||| | ||||| || | ||| || ||
Sbjct 42322 TTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGT 42381
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| || |||| || || | ||| | ||||||
Sbjct 42382 CTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| ||||| || || ||||| | ||||| |||| || || | |||||||| | ||||
Sbjct 49575 TGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAACTGC 49516
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| ||||| ||||| | |||||||||||| || ||||| || ||||||||||| ||||||
Sbjct 49515 TTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTT 49456
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||||||| || || | ||| | ||||| || | ||| || ||||| || |||
Sbjct 49455 GCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTC 49396
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
| || || | ||| | ||||||
Sbjct 49395 AGGGTCTTCACGAATATTTGCAT 49373
Score = 116 bits (128), Expect = 9e-21
Identities = 139/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || | ||| || || || || || || | ||||| |||| ||| || | |||||
Sbjct 41746 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATC 41805
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||||||||||| || |||||||| | |||||| ||||| || ||||| || ||||||||
Sbjct 41806 CTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 41865
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| || || | ||| | ||||| || | ||| || ||
Sbjct 41866 TTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGT 41925
Query 225681 CTTGCCCGT 225689
||| || ||
Sbjct 41926 CTTCCCAGT 41934
Score = 116 bits (128), Expect = 9e-21
Identities = 139/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || | ||| || || || || || || | ||||| |||| ||| || | |||||
Sbjct 41974 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATC 42033
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||||||||||| || |||||||| | |||||| ||||| || ||||| || ||||||||
Sbjct 42034 CTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 42093
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| || || | ||| | ||||| || | ||| || ||
Sbjct 42094 TTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGT 42153
Query 225681 CTTGCCCGT 225689
||| || ||
Sbjct 42154 CTTCCCAGT 42162
Score = 109 bits (120), Expect = 1e-18
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || | ||| || || || || || || | |||||||| | ||| || | |||||
Sbjct 42430 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATC 42489
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
|| |||||||| || ||||| || | |||||| ||||| || ||||| || ||||| ||
Sbjct 42490 CTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTATC 42549
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| |||||| || || | ||| | ||||| || || ||||| ||
Sbjct 42550 TTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTGATGGT 42609
Query 225681 CTTGCCCGTCAAAGTTTT 225698
|||||| || | |||||
Sbjct 42610 CTTGCCAGTGAGGGTTTT 42627
Score = 98.7 bits (108), Expect = 2e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| |||| || || ||||| || || || || ||||| | || || || | | |||
Sbjct 42649 ACGGAGTCGAAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGT 42708
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| | |||||| ||||||||||| | || ||||| || || ||||| ||
Sbjct 42709 GCGACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCC 42768
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || |||||||| ||| ||| || || | || || ||| || || |
Sbjct 42769 CTCCTTATCCTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCAACTTCCAG 42828
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| || |||||||| || | ||| || | || | ||||||
Sbjct 42829 CGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || || || || ||||| | ||||| |||| | ||| | ||||||
Sbjct 49356 AGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCT 49297
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | ||| || ||||| ||||| | || || || || || || ||||| |||||||||
Sbjct 49296 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCT 49237
Query 225622 TGGATCTTTTGCTTCAC 225638
|| ||||| ||||||
Sbjct 49236 TGAATCTTGGCCTTCAC 49220
>seq7187
Length=4100
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || ||||| || || |||||||| ||||||| ||||| || | ||| ||
Sbjct 621 ACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGT 680
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| || || ||||| || ||||| ||||| || ||||| ||
Sbjct 681 ACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCC 740
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| ||||||| || || | || || ||||| || |
Sbjct 741 CTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACTTCCAG 800
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || ||||| ||||| || || | ||| | |||||
Sbjct 801 TGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842
>seq7336
Length=62802
Score = 111 bits (122), Expect = 4e-19
Identities = 111/143 (78%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| ||||| || ||||| ||||| || || || ||||| | ||| || |||| | ||
Sbjct 18553 CGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGTC 18612
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||| || |||| |||||| || ||||||||||| |||||||| || || || || ||
Sbjct 18613 CGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCC 18672
Query 225613 TCCTTGTCTTGGATCTTTTGCTT 225635
|| ||||||||||| ||||||||
Sbjct 18673 TCTTTGTCTTGGAT-TTTTGCTT 18694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192330567432914
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