Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 206 2e-48
>seq11759
Length=791511
Score = 206 bits (228), Expect = 2e-48
Identities = 403/588 (69%), Gaps = 13/588 (2%)
Strand=Plus/Plus
Query 4539 AACAATAAA-CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGA 4597
|| ||||| || |||||||| || | |||||||||| || ||||| || |||
Sbjct 466063 AAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACT 466122
Query 4598 AAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCC 4657
||| || | || ||||| | ||| | ||| || ||||| || || | |||||||| ||
Sbjct 466123 AAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACC 466182
Query 4658 AGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGC 4717
||||||||||| |||||| ||||| || ||||| || | || || | | || |
Sbjct 466183 AGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGG--TGCC 466240
Query 4718 TTTGTCTTT--AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG 4775
||| | ||| |||||| | | ||||| | || || || ||| ||||| | ||
Sbjct 466241 TTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 466300
Query 4776 TATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATT 4832
| || |||||||| | | | | || | | ||| || | | || || || ||
Sbjct 466301 TGAATGGCGTTAAACAGAAAGTCGCGTT---CCATTGGATCCTTGACGTAGGTATCGATC 466357
Query 4833 AGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCAT 4892
|| || |||||||||||||| || ||||| | || | || | ||| ||||| ||
Sbjct 466358 AGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAA 466417
Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG-TTTTCGTTTACTAT 4951
| ||| || | | |||||| ||||||||||| || | | || ||||| || || ||
Sbjct 466418 CGAGCCTCGGGAATTTGAACCTCGTTACAAAAA-TTCAAAGTTAGATTTTCATTAACGAT 466476
Query 4952 ACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT 5011
|| ||||||||||| || || ||||| |||| || || |||| ||||| || ||
Sbjct 466477 GCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATT 466536
Query 5012 AAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071
||| ||| ||||| | | ||| || | || ||||||||| ||||| ||||| || ||
Sbjct 466537 AAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGA 466596
Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119
|| ||||||| ||||| | |||||||||| | || || || ||
Sbjct 466597 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGG 466644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426981257517623
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |