Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq11759 206 2e-48 >seq11759 Length=791511 Score = 206 bits (228), Expect = 2e-48 Identities = 403/588 (69%), Gaps = 13/588 (2%) Strand=Plus/Plus Query 4539 AACAATAAA-CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGA 4597 || ||||| || |||||||| || | |||||||||| || ||||| || ||| Sbjct 466063 AAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACT 466122 Query 4598 AAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCC 4657 ||| || | || ||||| | ||| | ||| || ||||| || || | |||||||| || Sbjct 466123 AAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACC 466182 Query 4658 AGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGC 4717 ||||||||||| |||||| ||||| || ||||| || | || || | | || | Sbjct 466183 AGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGG--TGCC 466240 Query 4718 TTTGTCTTT--AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG 4775 ||| | ||| |||||| | | ||||| | || || || ||| ||||| | || Sbjct 466241 TTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 466300 Query 4776 TATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATT 4832 | || |||||||| | | | | || | | ||| || | | || || || || Sbjct 466301 TGAATGGCGTTAAACAGAAAGTCGCGTT---CCATTGGATCCTTGACGTAGGTATCGATC 466357 Query 4833 AGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCAT 4892 || || |||||||||||||| || ||||| | || | || | ||| ||||| || Sbjct 466358 AGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAA 466417 Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG-TTTTCGTTTACTAT 4951 | ||| || | | |||||| ||||||||||| || | | || ||||| || || || Sbjct 466418 CGAGCCTCGGGAATTTGAACCTCGTTACAAAAA-TTCAAAGTTAGATTTTCATTAACGAT 466476 Query 4952 ACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT 5011 || ||||||||||| || || ||||| |||| || || |||| ||||| || || Sbjct 466477 GCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATT 466536 Query 5012 AAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 ||| ||| ||||| | | ||| || | || ||||||||| ||||| ||||| || || Sbjct 466537 AAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGA 466596 Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || ||||||| ||||| | |||||||||| | || || || || Sbjct 466597 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGG 466644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426981257517623