Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11759 264 2e-65 seq1473 214 2e-50 >seq11759 Length=791511 Score = 264 bits (292), Expect = 2e-65 Identities = 542/796 (68%), Gaps = 25/796 (3%) Strand=Plus/Plus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 |||| ||| |||||||| |||||| ||| | ||||||||| || ||||| Sbjct 465902 AGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATAAGA 465961 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 | ||| || || || || |||||||| || ||| ||| |||| || ||| || Sbjct 465962 TCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCAT---- 466017 Query 48090 GATGTTA----CCGTTTCCTCACTTGG----TGGATACAACAAATGTTTAAACATTAAAC 48141 ||||| | || ||||| | | || | |||| | ||||||||| || | | Sbjct 466018 GATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGATA----ATATGTTTAAAAATAAGGC 466073 Query 48142 ATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGAC 48201 |||||||||| || || ||||| |||| ||| || | || ||| ||| ||||| | Sbjct 466074 ATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGC 466133 Query 48202 CGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATA 48261 | ||||| || ||||| || |||||||| || || | || || || ||||||||||||| Sbjct 466134 CAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATA 466193 Query 48262 TGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-ACTGGCTTCGT-TGTG-TA 48318 |||||| ||||| || || || || | ||| |||| || ||| | | || | Sbjct 466194 CGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGCAA 466253 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 |||||| | |||||||| |||||||| ||||| |||| |||| || || |||| Sbjct 466254 TCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAA 466313 Query 48379 AGAGAAAGt-ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 | ||||||| || ||||| ||| || ||||| ||||| || | |||| |||||| Sbjct 466314 ACAGAAAGTCGCGTTCCATTG-GATCCTTGACGTAGGTATCGATCAGAAGAGAGTACATT 466372 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || || ||||| ||||| | || | || | ||| |||||||| | || || | || Sbjct 466373 TCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATT 466432 Query 48498 TGTACCTCCGTACAAAATCGTTC--AGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || ||||| ||||||| ||| || | ||| ||||| || || |||||||| || | Sbjct 466433 TGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTG 466490 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | || || || || |||| ||| || | |||| | | || | | ||||| Sbjct 466491 CGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGT 466550 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 || ||| ||| || | || ||| ||||| ||| | ||||| || || || | ||||| | Sbjct 466551 CAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCT 466610 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 | || | | ||| |||||| ||||||||| || | | ||| ||||| ||||| Sbjct 466611 TGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTTCGGGGATTAG 466670 Query 48736 TTGCAAGGATAGGTTC 48751 |||| |||||||| Sbjct 466671 GAACAAGTATAGGTTC 466686 >seq1473 Length=538379 Score = 214 bits (236), Expect = 2e-50 Identities = 424/623 (68%), Gaps = 6/623 (1%) Strand=Plus/Minus Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 || ||| ||||||||| || |||||| ||| | | || |||||||||| ||| | Sbjct 274592 TAAAGCATTTCAAATTCCTCCCCCCAACAGTCAGCAAGACCGGGGCATTCATGGGGGTCC 274533 Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035 || || | ||| || | || ||| |||||| ||||| || ||||| || | ||| || Sbjct 274532 ATAAAGGTCCACAAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAACCCAAAGT 274473 Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA 78095 || | || ||||| || | | | || ||| || || ||||| | || | | Sbjct 274472 GCGAGGAAGAGATCCCGAGCGCGAATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACA 274413 Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTA 78155 |||| || | ||| | |||||||||||| ||||| || || | | || |||||||| Sbjct 274412 AACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTG 274353 Query 78156 TTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 78215 || ||||||||||| | ||| | |||||| | || | || | | ||| || | || | Sbjct 274352 TTGCCTCCCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGA 274293 Query 78216 CCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC-GCGAAT--ATTACTA 78272 ||||| || ||||| ||||||| ||| ||| | ||||| || || | | Sbjct 274292 CCGTTGGACTCCCCATTGGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAAC 274234 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 || || | || || || || || | || || || || || || |||| | || || Sbjct 274233 ATTGAGA--CCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCA 274176 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 || |||||||| |||||||| || |||| |||| | ||||||||| ||||| ||| | Sbjct 274175 TATATACCCTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGG 274116 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGT 78452 | | || || |||||||| | || || || || || | ||||| |||||||| | | Sbjct 274115 TAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATT 274056 Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512 ||||| || || |||||||| | || | || |||||| |||| || || ||| Sbjct 274055 AGATTATAGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATCGAGACGCGC 273996 Query 78513 ATCAACATATGCTGAGGTCTTTC 78535 || ||||| | |||||| || || Sbjct 273995 ATAAACATGTACTGAGGCCTCTC 273973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694554778799840