Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 264 2e-65
seq1473 214 2e-50
>seq11759
Length=791511
Score = 264 bits (292), Expect = 2e-65
Identities = 542/796 (68%), Gaps = 25/796 (3%)
Strand=Plus/Plus
Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029
|||| ||| |||||||| |||||| ||| | ||||||||| || |||||
Sbjct 465902 AGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATAAGA 465961
Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089
| ||| || || || || |||||||| || ||| ||| |||| || ||| ||
Sbjct 465962 TCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCAT---- 466017
Query 48090 GATGTTA----CCGTTTCCTCACTTGG----TGGATACAACAAATGTTTAAACATTAAAC 48141
||||| | || ||||| | | || | |||| | ||||||||| || | |
Sbjct 466018 GATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGATA----ATATGTTTAAAAATAAGGC 466073
Query 48142 ATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGAC 48201
|||||||||| || || ||||| |||| ||| || | || ||| ||| ||||| |
Sbjct 466074 ATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGC 466133
Query 48202 CGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATA 48261
| ||||| || ||||| || |||||||| || || | || || || |||||||||||||
Sbjct 466134 CAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATA 466193
Query 48262 TGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-ACTGGCTTCGT-TGTG-TA 48318
|||||| ||||| || || || || | ||| |||| || ||| | | || |
Sbjct 466194 CGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGCAA 466253
Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378
|||||| | |||||||| |||||||| ||||| |||| |||| || || ||||
Sbjct 466254 TCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAA 466313
Query 48379 AGAGAAAGt-ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437
| ||||||| || ||||| ||| || ||||| ||||| || | |||| ||||||
Sbjct 466314 ACAGAAAGTCGCGTTCCATTG-GATCCTTGACGTAGGTATCGATCAGAAGAGAGTACATT 466372
Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497
|| || ||||| ||||| | || | || | ||| |||||||| | || || | ||
Sbjct 466373 TCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATT 466432
Query 48498 TGTACCTCCGTACAAAATCGTTC--AGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555
|| ||||| ||||||| ||| || | ||| ||||| || || |||||||| || |
Sbjct 466433 TGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTG 466490
Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615
| || || || || |||| ||| || | |||| | | || | | |||||
Sbjct 466491 CGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGT 466550
Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675
|| ||| ||| || | || ||| ||||| ||| | ||||| || || || | ||||| |
Sbjct 466551 CAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCT 466610
Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735
| || | | ||| |||||| ||||||||| || | | ||| ||||| |||||
Sbjct 466611 TGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTTCGGGGATTAG 466670
Query 48736 TTGCAAGGATAGGTTC 48751
|||| ||||||||
Sbjct 466671 GAACAAGTATAGGTTC 466686
>seq1473
Length=538379
Score = 214 bits (236), Expect = 2e-50
Identities = 424/623 (68%), Gaps = 6/623 (1%)
Strand=Plus/Minus
Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975
|| ||| ||||||||| || |||||| ||| | | || |||||||||| ||| |
Sbjct 274592 TAAAGCATTTCAAATTCCTCCCCCCAACAGTCAGCAAGACCGGGGCATTCATGGGGGTCC 274533
Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035
|| || | ||| || | || ||| |||||| ||||| || ||||| || | ||| ||
Sbjct 274532 ATAAAGGTCCACAAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAACCCAAAGT 274473
Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA 78095
|| | || ||||| || | | | || ||| || || ||||| | || | |
Sbjct 274472 GCGAGGAAGAGATCCCGAGCGCGAATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACA 274413
Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTA 78155
|||| || | ||| | |||||||||||| ||||| || || | | || ||||||||
Sbjct 274412 AACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTG 274353
Query 78156 TTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 78215
|| ||||||||||| | ||| | |||||| | || | || | | ||| || | || |
Sbjct 274352 TTGCCTCCCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGA 274293
Query 78216 CCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC-GCGAAT--ATTACTA 78272
||||| || ||||| ||||||| ||| ||| | ||||| || || | |
Sbjct 274292 CCGTTGGACTCCCCATTGGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAAC 274234
Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332
|| || | || || || || || | || || || || || || |||| | || ||
Sbjct 274233 ATTGAGA--CCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCA 274176
Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392
|| |||||||| |||||||| || |||| |||| | ||||||||| ||||| ||| |
Sbjct 274175 TATATACCCTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGG 274116
Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGT 78452
| | || || |||||||| | || || || || || | ||||| |||||||| | |
Sbjct 274115 TAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATT 274056
Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512
||||| || || |||||||| | || | || |||||| |||| || || |||
Sbjct 274055 AGATTATAGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATCGAGACGCGC 273996
Query 78513 ATCAACATATGCTGAGGTCTTTC 78535
|| ||||| | |||||| || ||
Sbjct 273995 ATAAACATGTACTGAGGCCTCTC 273973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694554778799840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |