Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 311 1e-79
seq1473 217 2e-51
>seq11759
Length=791511
Score = 311 bits (344), Expect = 1e-79
Identities = 550/794 (69%), Gaps = 21/794 (3%)
Strand=Plus/Plus
Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518
|||| ||| |||||||| ||||||| ||| | ||||||||| || || ||
Sbjct 465902 AGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATAAGA 465961
Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578
| || || || || || |||||||| || ||||||| |||| || ||| ||
Sbjct 465962 TCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCAT---- 466017
Query 46579 GATGTTA----CTGTTTCCTCACTTGG-TGGATGCATCAAATGTTTAAACATTAAACATG 46633
||||| | | ||||| | | || | | || || | ||||||||| || | ||||
Sbjct 466018 GATGTCATAAACCCTTTCCGCCGTAGGCTTGTTG-ATAATATGTTTAAAAATAAGGCATG 466076
Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693
||||||| || |||||||| |||| ||| || | || ||| ||| ||||| ||||
Sbjct 466077 CAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCAG 466136
Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753
|||| || |||||||| |||||||| || || | || || || ||||||||||||| ||
Sbjct 466137 GCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATACGC 466196
Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCC 46810
|||| || || ||||| || || || | ||| |||| || | |||| |||||
Sbjct 466197 CTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGCAATCC 466256
Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870
|||| | |||||||| ||||| || ||||| |||| |||| || || ||||| |
Sbjct 466257 ACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACA 466316
Query 46871 GAAAGtttttttCATCACT--ATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928
|||||| ||| || | ||| || || || ||||| || | |||| ||||||||
Sbjct 466317 GAAAGTCGCGTTC--CATTGGATCCTTGACGTAGGTATCGATCAGAAGAGAGTACATTTC 466374
Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988
|||||||||||||| | || | || | ||| |||||||| | || || | ||| ||
Sbjct 466375 AGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTG 466434
Query 46989 TACCTCTGTACAAAATCGTTC--AGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046
||||| ||||||| ||| || | ||| ||||| || || |||||||| || ||
Sbjct 466435 AACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGCG 466492
Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106
|| || ||||| |||| ||| || | ||| | | | || | | |||||||
Sbjct 466493 AAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGTCA 466552
Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166
||| ||| || | || ||| ||||| ||| | |||||||| || || | ||||| ||
Sbjct 466553 GTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCTTG 466612
Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTT 47226
|| | | ||| |||||| | |||||||| || | | ||| ||||| |||||
Sbjct 466613 TAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTTCGGGGATTAGGA 466672
Query 47227 GCAAGTATAGGTTC 47240
|||||||||||||
Sbjct 466673 ACAAGTATAGGTTC 466686
>seq1473
Length=538379
Score = 217 bits (240), Expect = 2e-51
Identities = 414/607 (68%), Gaps = 2/607 (0%)
Strand=Plus/Minus
Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578
||||||||| || |||||| ||| | | ||| || ||||||| || ||| || |
Sbjct 274584 TTCAAATTCCTCCCCCCAACAGTCAGCAAGACCGGGGCATTCATGGGGGTCCATAAAGGT 274525
Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638
|||| || | || ||| ||| || ||||| || ||||| || | ||| || || | ||
Sbjct 274524 CCACAAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAA 274465
Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698
||||| || | | | || ||| || || ||||| | || | |||| ||
Sbjct 274464 GAGATCCCGAGCGCGAATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 274405
Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758
| ||| | |||||||||||| ||||| || || | |||| |||||||| || |||||
Sbjct 274404 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCC 274345
Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818
|||||| | ||| | || ||| | || | || | | ||| || | || ||||| ||
Sbjct 274344 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGA 274285
Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGC-ACGAATATTACTAATAGATAGGC 76877
||||| ||||||| ||| ||| | | ||| || || || | || |
Sbjct 274284 CTCCCCATTGGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAACATTGAGAC 274226
Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937
| || || || || |||| ||||| || ||||| |||| | |||||||| || ||||
Sbjct 274225 CGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCT 274166
Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997
| ||||| || || |||| |||| | ||||||||| ||||| ||| | | | || |
Sbjct 274165 CGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCC 274106
Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057
| |||||||| | || || || || ||| | ||||| |||||||| | |||||| || |
Sbjct 274105 CAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGG 274046
Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117
| |||||| | || || | ||| |||||| |||| | ||| ||||| ||||| |
Sbjct 274045 TCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGT 273986
Query 77118 GCTGAGG 77124
||||||
Sbjct 273985 ACTGAGG 273979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712817380729920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |