Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11759 311 1e-79 seq1473 217 2e-51 >seq11759 Length=791511 Score = 311 bits (344), Expect = 1e-79 Identities = 550/794 (69%), Gaps = 21/794 (3%) Strand=Plus/Plus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 |||| ||| |||||||| ||||||| ||| | ||||||||| || || || Sbjct 465902 AGTCGATCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATAAGA 465961 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || || || || || |||||||| || ||||||| |||| || ||| || Sbjct 465962 TCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCAT---- 466017 Query 46579 GATGTTA----CTGTTTCCTCACTTGG-TGGATGCATCAAATGTTTAAACATTAAACATG 46633 ||||| | | ||||| | | || | | || || | ||||||||| || | |||| Sbjct 466018 GATGTCATAAACCCTTTCCGCCGTAGGCTTGTTG-ATAATATGTTTAAAAATAAGGCATG 466076 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 ||||||| || |||||||| |||| ||| || | || ||| ||| ||||| |||| Sbjct 466077 CAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCAG 466136 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| || |||||||| |||||||| || || | || || || ||||||||||||| || Sbjct 466137 GCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATACGC 466196 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCC 46810 |||| || || ||||| || || || | ||| |||| || | |||| ||||| Sbjct 466197 CTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGCAATCC 466256 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 |||| | |||||||| ||||| || ||||| |||| |||| || || ||||| | Sbjct 466257 ACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACA 466316 Query 46871 GAAAGtttttttCATCACT--ATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 |||||| ||| || | ||| || || || ||||| || | |||| |||||||| Sbjct 466317 GAAAGTCGCGTTC--CATTGGATCCTTGACGTAGGTATCGATCAGAAGAGAGTACATTTC 466374 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 |||||||||||||| | || | || | ||| |||||||| | || || | ||| || Sbjct 466375 AGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTG 466434 Query 46989 TACCTCTGTACAAAATCGTTC--AGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 ||||| ||||||| ||| || | ||| ||||| || || |||||||| || || Sbjct 466435 AACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGCG 466492 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 || || ||||| |||| ||| || | ||| | | | || | | ||||||| Sbjct 466493 AAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGTCA 466552 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 ||| ||| || | || ||| ||||| ||| | |||||||| || || | ||||| || Sbjct 466553 GTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCTTG 466612 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTT 47226 || | | ||| |||||| | |||||||| || | | ||| ||||| ||||| Sbjct 466613 TAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTTCGGGGATTAGGA 466672 Query 47227 GCAAGTATAGGTTC 47240 ||||||||||||| Sbjct 466673 ACAAGTATAGGTTC 466686 >seq1473 Length=538379 Score = 217 bits (240), Expect = 2e-51 Identities = 414/607 (68%), Gaps = 2/607 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| || |||||| ||| | | ||| || ||||||| || ||| || | Sbjct 274584 TTCAAATTCCTCCCCCCAACAGTCAGCAAGACCGGGGCATTCATGGGGGTCCATAAAGGT 274525 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 |||| || | || ||| ||| || ||||| || ||||| || | ||| || || | || Sbjct 274524 CCACAAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAA 274465 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 ||||| || | | | || ||| || || ||||| | || | |||| || Sbjct 274464 GAGATCCCGAGCGCGAATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 274405 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||| | |||||||||||| ||||| || || | |||| |||||||| || ||||| Sbjct 274404 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCC 274345 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 |||||| | ||| | || ||| | || | || | | ||| || | || ||||| || Sbjct 274344 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGA 274285 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGC-ACGAATATTACTAATAGATAGGC 76877 ||||| ||||||| ||| ||| | | ||| || || || | || | Sbjct 274284 CTCCCCATTGGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAACATTGAGAC 274226 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || || || |||| ||||| || ||||| |||| | |||||||| || |||| Sbjct 274225 CGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCT 274166 Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997 | ||||| || || |||| |||| | ||||||||| ||||| ||| | | | || | Sbjct 274165 CGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCC 274106 Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057 | |||||||| | || || || || ||| | ||||| |||||||| | |||||| || | Sbjct 274105 CAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGG 274046 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | |||||| | || || | ||| |||||| |||| | ||| ||||| ||||| | Sbjct 274045 TCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGT 273986 Query 77118 GCTGAGG 77124 |||||| Sbjct 273985 ACTGAGG 273979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712817380729920