Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 120 7e-22
seq7187 109 1e-18
seq7336 104 5e-17
seq7000 98.7 2e-15
>seq1039
Length=57342
Score = 120 bits (132), Expect = 7e-22
Identities = 160/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||||||||| || || || |||||||||||||| || | || || | ||||||
Sbjct 31543 AGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCT 31602
Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| | ||||| || || ||||| || | |||||||| | | || |||||||| |
Sbjct 31603 TCCAACTGCTTT--CCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTAT 31660
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTA-CG-CTGTCTGAACTCTCTACTTCAAGAGTAAT 152068
||||||| || || ||| |||||| || | ||| ||| || || || || ||
Sbjct 31661 CTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTG--GGCTCCACCTCCAGTGTGAT 31718
Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|||||||| || |||||||||||||||| |||||||
Sbjct 31719 TGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 31755
Score = 111 bits (122), Expect = 4e-19
Identities = 158/217 (73%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| ||||||||||| || || || |||||||||||||| || | || || | |||||
Sbjct 31998 GAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATC 32057
Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||| | ||||| || || ||||| || | |||||||| | | || || |||||
Sbjct 32058 TTCCAACTGCTTT--CCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 32115
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTA-CG-CTGTCTGAACTCTCTACTTCAAGAGTAA 152067
|||||||| || || ||| |||||| || | ||| ||| ||||| || || |
Sbjct 32116 TCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTG--GGCTCCACTTCCAGTGTGA 32173
Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| |||||||| || | ||||||||||||| ||||||
Sbjct 32174 TTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210
Score = 100 bits (110), Expect = 7e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|||| || |||||||| || || ||||| ||||| |||||||| || | | || |
Sbjct 42881 AGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGA 42940
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| | ||||| || |||||||| | |||||||||| | || || |||
Sbjct 42941 CCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCC 43000
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| |||||||| || || ||| |||| | |||| || || || || ||
Sbjct 43001 TTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTG 43060
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| || ||||||||||| || | |||||
Sbjct 43061 ATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 95.1 bits (104), Expect = 3e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || ||||| || ||||| ||||| |||||||| |||| | ||| | ||||||
Sbjct 49356 AGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCT 49297
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | ||| || || ||||| | | |||||| |||| | ||| || ||||| |||
Sbjct 49296 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCT 49237
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || || |||| | || | ||| || || || || |||||
Sbjct 49236 TGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 49177
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||||||||||| |||||
Sbjct 49176 TTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145
Score = 93.3 bits (102), Expect = 1e-13
Identities = 151/213 (71%), Gaps = 11/213 (5%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || ||||| || || |||||||| |||| || || | ||||| ||||
Sbjct 42208 CAAG-TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTA 42266
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| || |||||||| | | |||||||| | | || || ||||| |||||
Sbjct 42267 GCTGCTTT--CCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTG 42324
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071
|| || || ||| |||||| ||| |||| || || || || ||||||||
Sbjct 42325 GATCTTCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGT 42381
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||||||||| | |||||
Sbjct 42382 CTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414
Score = 87.8 bits (96), Expect = 4e-12
Identities = 149/215 (69%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| ||||| || || || || |||||||||||||| | | ||| | ||||||
Sbjct 41519 AGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCT 41578
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || || || ||||| | | || ||||| | | || || ||||| |||
Sbjct 41579 TCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCT 41638
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
||||| || || ||| |||||| ||| ||| ||| || || || ||||||
Sbjct 41639 TGAATCTTCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATA 41695
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || |||||||| || | ||||||
Sbjct 41696 GTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41730
Score = 87.8 bits (96), Expect = 4e-12
Identities = 149/215 (69%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| ||||| ||||| |||||||| |||| | || | ||||||
Sbjct 49584 AGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCT 49525
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || || || ||||| | | || ||||| | | || || ||||| |||
Sbjct 49524 TCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCT 49465
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATA 152069
||||| ||| || ||| |||||| ||| |||| || || || || ||||||
Sbjct 49464 TGAATCTTTGCCTTCACATTCTCTATCGAGTC---ACTCGGCTCCACCTCCAGCGTAATA 49408
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || ||||||||||| | |||||
Sbjct 49407 GTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
>seq7187
Length=4100
Score = 109 bits (120), Expect = 1e-18
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||||||||| || || || |||||||||||||| || | || || | ||||||
Sbjct 631 AGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCT 690
Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| | ||||| || || ||||| || | |||||||| | | || || ||||| |
Sbjct 691 TCCAACTGCTTT--CCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGT 748
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTA-CG-CTGTCTGAACTCTCTACTTCAAGAGTAAT 152068
||||||| || || ||| |||||| || | ||| ||| ||||| || || ||
Sbjct 749 CTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTG--GGCTCCACTTCCAGTGTGAT 806
Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||||| || | ||||||||||||| ||||||
Sbjct 807 TGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842
>seq7336
Length=62802
Score = 104 bits (114), Expect = 5e-17
Identities = 157/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| || |||||||| || || ||||| ||||| || || || |||| | || | |
Sbjct 18556 AGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGTCCGC 18615
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|| || |||| || |||||||||||||||| || || || | | ||||| ||
Sbjct 18616 CCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCT 18675
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063
|| ||||| |||||| ||| || |||| | | || ||| ||| || |||||
Sbjct 18676 TTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGG 18732
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || ||||| || ||||||||||| || || | ||||||
Sbjct 18733 GTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 18774
>seq7000
Length=1252665
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| ||||| || ||||| || || || |||||||| | ||| | | |||||
Sbjct 319592 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 319651
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || || || || ||||| | ||| ||||| | || || || ||||| ||
Sbjct 319652 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCC 319711
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || ||| |||| | || ||| || || |||||||| ||||||
Sbjct 319712 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTT 319771
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || ||||| ||||| || | ||||||
Sbjct 319772 TTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 319803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153626680106901
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |