Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1039 120 7e-22 seq7187 109 1e-18 seq7336 104 5e-17 seq7000 98.7 2e-15 >seq1039 Length=57342 Score = 120 bits (132), Expect = 7e-22 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || || || |||||||||||||| || | || || | |||||| Sbjct 31543 AGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCT 31602 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || || ||||| || | |||||||| | | || |||||||| | Sbjct 31603 TCCAACTGCTTT--CCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTAT 31660 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTA-CG-CTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||| || || ||| |||||| || | ||| ||| || || || || || Sbjct 31661 CTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTG--GGCTCCACCTCCAGTGTGAT 31718 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || |||||||||||||||| ||||||| Sbjct 31719 TGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 31755 Score = 111 bits (122), Expect = 4e-19 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||||||||| || || || |||||||||||||| || | || || | ||||| Sbjct 31998 GAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATC 32057 Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| | ||||| || || ||||| || | |||||||| | | || || ||||| Sbjct 32058 TTCCAACTGCTTT--CCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 32115 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTA-CG-CTGTCTGAACTCTCTACTTCAAGAGTAA 152067 |||||||| || || ||| |||||| || | ||| ||| ||||| || || | Sbjct 32116 TCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTG--GGCTCCACTTCCAGTGTGA 32173 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || | ||||||||||||| |||||| Sbjct 32174 TTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || |||||||| || || ||||| ||||| |||||||| || | | || | Sbjct 42881 AGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGA 42940 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | ||||| || |||||||| | |||||||||| | || || ||| Sbjct 42941 CCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCC 43000 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || || ||| |||| | |||| || || || || || Sbjct 43001 TTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTG 43060 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || ||||||||||| || | ||||| Sbjct 43061 ATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || ||||| ||||| |||||||| |||| | ||| | |||||| Sbjct 49356 AGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCT 49297 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || ||||| | | |||||| |||| | ||| || ||||| ||| Sbjct 49296 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCT 49237 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || |||| | || | ||| || || || || ||||| Sbjct 49236 TGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 49177 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||||||||||| ||||| Sbjct 49176 TTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/213 (71%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || || |||||||| |||| || || | ||||| |||| Sbjct 42208 CAAG-TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTA 42266 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || |||||||| | | |||||||| | | || || ||||| ||||| Sbjct 42267 GCTGCTTT--CCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTG 42324 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071 || || || ||| |||||| ||| |||| || || || || |||||||| Sbjct 42325 GATCTTCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGT 42381 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||||||||| | ||||| Sbjct 42382 CTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || || || || |||||||||||||| | | ||| | |||||| Sbjct 41519 AGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCT 41578 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| | | || ||||| | | || || ||||| ||| Sbjct 41579 TCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCT 41638 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||| || || ||| |||||| ||| ||| ||| || || || |||||| Sbjct 41639 TGAATCTTCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATA 41695 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| || | |||||| Sbjct 41696 GTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41730 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| ||||| ||||| |||||||| |||| | || | |||||| Sbjct 49584 AGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCT 49525 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| | | || ||||| | | || || ||||| ||| Sbjct 49524 TCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCT 49465 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATA 152069 ||||| ||| || ||| |||||| ||| |||| || || || || |||||| Sbjct 49464 TGAATCTTTGCCTTCACATTCTCTATCGAGTC---ACTCGGCTCCACCTCCAGCGTAATA 49408 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||||||||| | ||||| Sbjct 49407 GTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 >seq7187 Length=4100 Score = 109 bits (120), Expect = 1e-18 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || || || |||||||||||||| || | || || | |||||| Sbjct 631 AGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCT 690 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || || ||||| || | |||||||| | | || || ||||| | Sbjct 691 TCCAACTGCTTT--CCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGT 748 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTA-CG-CTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||| || || ||| |||||| || | ||| ||| ||||| || || || Sbjct 749 CTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTG--GGCTCCACTTCCAGTGTGAT 806 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || | ||||||||||||| |||||| Sbjct 807 TGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842 >seq7336 Length=62802 Score = 104 bits (114), Expect = 5e-17 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || |||||||| || || ||||| ||||| || || || |||| | || | | Sbjct 18556 AGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGTCCGC 18615 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || |||| || |||||||||||||||| || || || | | ||||| || Sbjct 18616 CCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCT 18675 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || ||||| |||||| ||| || |||| | | || ||| ||| || ||||| Sbjct 18676 TTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGG 18732 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || ||||||||||| || || | |||||| Sbjct 18733 GTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 18774 >seq7000 Length=1252665 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||| || || || |||||||| | ||| | | ||||| Sbjct 319592 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 319651 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || || ||||| | ||| ||||| | || || || ||||| || Sbjct 319652 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCC 319711 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| |||| | || ||| || || |||||||| |||||| Sbjct 319712 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTT 319771 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| ||||| || | |||||| Sbjct 319772 TTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 319803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153626680106901