Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 152 1e-31
seq7187 143 6e-29
seq7000 136 8e-27
seq7336 107 4e-18
>seq1039
Length=57342
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| ||||| ||||| || | || || ||||| ||||||||||| | |
Sbjct 49371 CCACCACGCAGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAA 49312
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| ||||| || | ||||| || |||||||||||||| || || || ||
Sbjct 49311 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 49252
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||||||||| ||||| || || ||| | || || | || || || ||
Sbjct 49251 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACC 49192
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 49191 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145
Score = 152 bits (168), Expect = 1e-31
Identities = 176/237 (74%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 282863 AAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTT 282922
|||| | |||| ||||| |||||||| |||| ||| | || || ||||| |||||
Sbjct 49609 AAAAAATCAACCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTT 49550
Query 282923 GTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTG 282982
|||||| | || ||||| ||||| || | || || || ||||||||||| ||||||||
Sbjct 49549 GTAGTCGGACAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTG 49490
Query 282983 GTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042
||| ||||| |||||||||||||| |||||||| || || | || || | |||
Sbjct 49489 GTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACT 49430
Query 283043 AGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || || || || || ||||| || |||| ||||| |||||||| |||||
Sbjct 49429 CGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || || ||||| | ||| ||| |||||||||||||||||||
Sbjct 31984 CCACCACGAAGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 32043
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || ||||| || | || || || |||||||||| ||||| ||||| |||
Sbjct 32044 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 32103
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||| ||||| || || || | || || | || | || |||
Sbjct 32104 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACT 32163
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| || || || ||||| ||||| ||||| ||||||||
Sbjct 32164 TCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210
Score = 143 bits (158), Expect = 6e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930
|||| ||||| |||||||| || || || | || ||| || ||||||||||| ||||
Sbjct 41502 AACCCCCACGAAGGCGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAG 41561
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
||| || || ||||| || | || || || ||||||||||| ||||||||||| |
Sbjct 41562 AAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTG 41621
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| |||||||||||||| ||||| || || || | || || | ||| | || |
Sbjct 41622 GAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCA 41681
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || || || ||||| || || | ||||| || |||||||||||
Sbjct 41682 CCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41730
Score = 143 bits (158), Expect = 6e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
|||||||||| || || |||| || | ||| || || || ||||||||||| | |
Sbjct 42188 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42247
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| ||||||||||| || || || || |||||||| ||||| ||||| ||
Sbjct 42248 AAG-GTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42306
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||||||||| || || || | || || | ||| | || ||
Sbjct 42307 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42366
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || || ||||| || |||| ||||| |||||||| |||||
Sbjct 42367 CTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414
Score = 138 bits (152), Expect = 2e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
|||||||||| || || |||| || | ||| || || || ||||||||||| | |
Sbjct 41732 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 41791
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| ||||||||||| || || || || |||||||| ||||| ||||| ||
Sbjct 41792 AAG-GTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 41850
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||||||||| || || || | || || | ||| | || ||
Sbjct 41851 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 41910
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || || ||||| || || | ||||| || |||||||||||
Sbjct 41911 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958
Score = 138 bits (152), Expect = 2e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
|||||||||| || || |||| || | ||| || || || ||||||||||| | |
Sbjct 41960 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42019
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| ||||||||||| || || || || |||||||| ||||| ||||| ||
Sbjct 42020 AAG-GTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42078
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||||||||| || || || | || || | ||| | || ||
Sbjct 42079 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42138
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || || ||||| || || | ||||| || |||||||||||
Sbjct 42139 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186
Score = 136 bits (150), Expect = 8e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| || ||||| | || || ||||| |||||||||||||
Sbjct 42871 ACCACCACGAAGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGA 42930
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || ||||| || | || ||||| |||||||| | ||||| ||||| ||
Sbjct 42931 CAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGG 42990
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||| ||||| || || || | || || ||||| | ||| ||
Sbjct 42991 AATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCAC 43050
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| || || || || | |||||| || || || |||||
Sbjct 43051 CTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 132 bits (146), Expect = 1e-25
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| || || || | ||| || ||||| ||||| |||||||
Sbjct 42643 ACCACCACGGAGTCGAAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGA 42702
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| || || || | || || || || ||||||||||| ||||| || ||
Sbjct 42703 AAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGG 42762
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||| || |||||||| || ||||| | || || | || | ||| ||
Sbjct 42763 AATGCCCTCCTTATCCTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCAAC 42822
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| || || || ||||| || || | |||||| || || || |||||
Sbjct 42823 TTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870
Score = 129 bits (142), Expect = 1e-24
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
|||||||||| || || |||| || | ||| || || || |||||||| |||| |
Sbjct 42416 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGAC 42475
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| |||||||| || || || || || || ||||| ||||| ||||| ||
Sbjct 42476 AAG-GTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGG 42534
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||| ||||||||||| || || ||| | || || | ||| | || ||
Sbjct 42535 AATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCAC 42594
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||| ||||| || || | || ||||| |||||||||||
Sbjct 42595 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642
Score = 127 bits (140), Expect = 4e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| || ||||| | ||| ||| |||||||||||||||||||
Sbjct 31528 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 31587
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || ||||| || | || || || |||||||||| ||||| ||||| |||
Sbjct 31588 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 31647
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || ||||| ||||| ||||| || || || | || || | || | || ||
Sbjct 31648 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACC 31707
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || ||||| || || || || | |||||| ||||| |||||||||
Sbjct 31708 TCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 31755
>seq7187
Length=4100
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| || ||||| | ||| ||| |||||||||||||||||||
Sbjct 616 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 675
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || ||||| || | || || || |||||||||| ||||| ||||| |||
Sbjct 676 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 735
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||| ||||| || || || | || || | || | || |||
Sbjct 736 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACT 795
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| || || || ||||| ||||| ||||| ||||||||
Sbjct 796 TCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842
>seq7000
Length=1252665
Score = 136 bits (150), Expect = 8e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| |||||||| || || || | || || || || || ||||| ||||
Sbjct 319576 ACCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGA 319635
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| | || |||||||| | ||| || || ||||| || | ||| |||||||| |||
Sbjct 319636 TAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGG 319695
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| || || || | || |||| || |||| ||||||
Sbjct 319696 AATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGAC 319755
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| || || || || | ||| || || || ||||||||
Sbjct 319756 CTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 319803
>seq7336
Length=62802
Score = 107 bits (118), Expect = 4e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||| || || ||||| | || || || || ||||||| || || ||||| |||
Sbjct 18583 TCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAG 18642
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | |||||||| || || || ||||| ||||||||||| |||||||||||| |
Sbjct 18643 ATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTC 18702
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| | || | || || || || || || || || || || | |||||||||
Sbjct 18703 TCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACA 18762
Query 283089 AATATCTGCATT 283100
|| || ||||||
Sbjct 18763 AAAATTTGCATT 18774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046563095615674
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