Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1039 152 1e-31 seq7187 143 6e-29 seq7000 136 8e-27 seq7336 107 4e-18 >seq1039 Length=57342 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| ||||| || | || || ||||| ||||||||||| | | Sbjct 49371 CCACCACGCAGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAA 49312 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || | ||||| || |||||||||||||| || || || || Sbjct 49311 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 49252 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||| ||||| || || ||| | || || | || || || || Sbjct 49251 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACC 49192 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 49191 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145 Score = 152 bits (168), Expect = 1e-31 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 282863 AAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTT 282922 |||| | |||| ||||| |||||||| |||| ||| | || || ||||| ||||| Sbjct 49609 AAAAAATCAACCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTT 49550 Query 282923 GTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTG 282982 |||||| | || ||||| ||||| || | || || || ||||||||||| |||||||| Sbjct 49549 GTAGTCGGACAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTG 49490 Query 282983 GTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042 ||| ||||| |||||||||||||| |||||||| || || | || || | ||| Sbjct 49489 GTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACT 49430 Query 283043 AGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || || || ||||| || |||| ||||| |||||||| ||||| Sbjct 49429 CGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || ||||| | ||| ||| ||||||||||||||||||| Sbjct 31984 CCACCACGAAGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 32043 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || | || || || |||||||||| ||||| ||||| ||| Sbjct 32044 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 32103 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| ||||| || || || | || || | || | || ||| Sbjct 32104 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACT 32163 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 32164 TCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210 Score = 143 bits (158), Expect = 6e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| ||||| |||||||| || || || | || ||| || ||||||||||| |||| Sbjct 41502 AACCCCCACGAAGGCGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAG 41561 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| || || ||||| || | || || || ||||||||||| ||||||||||| | Sbjct 41562 AAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTG 41621 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| |||||||||||||| ||||| || || || | || || | ||| | || | Sbjct 41622 GAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCA 41681 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || ||||| || || | ||||| || ||||||||||| Sbjct 41682 CCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41730 Score = 143 bits (158), Expect = 6e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 |||||||||| || || |||| || | ||| || || || ||||||||||| | | Sbjct 42188 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42247 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||||||||| || || || || |||||||| ||||| ||||| || Sbjct 42248 AAG-GTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42306 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||||||||| || || || | || || | ||| | || || Sbjct 42307 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42366 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| |||||||| ||||| Sbjct 42367 CTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 |||||||||| || || |||| || | ||| || || || ||||||||||| | | Sbjct 41732 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 41791 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||||||||| || || || || |||||||| ||||| ||||| || Sbjct 41792 AAG-GTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 41850 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||||||||| || || || | || || | ||| | || || Sbjct 41851 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 41910 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | ||||| || ||||||||||| Sbjct 41911 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 |||||||||| || || |||| || | ||| || || || ||||||||||| | | Sbjct 41960 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42019 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||||||||| || || || || |||||||| ||||| ||||| || Sbjct 42020 AAG-GTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42078 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||||||||| || || || | || || | ||| | || || Sbjct 42079 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42138 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | ||||| || ||||||||||| Sbjct 42139 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || ||||| | || || ||||| ||||||||||||| Sbjct 42871 ACCACCACGAAGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGA 42930 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || | || ||||| |||||||| | ||||| ||||| || Sbjct 42931 CAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGG 42990 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||| ||||| || || || | || || ||||| | ||| || Sbjct 42991 AATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCAC 43050 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || || | |||||| || || || ||||| Sbjct 43051 CTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| || ||||| ||||| ||||||| Sbjct 42643 ACCACCACGGAGTCGAAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGA 42702 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || || || | || || || || ||||||||||| ||||| || || Sbjct 42703 AAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGG 42762 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || |||||||| || ||||| | || || | || | ||| || Sbjct 42763 AATGCCCTCCTTATCCTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCAAC 42822 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || ||||| || || | |||||| || || || ||||| Sbjct 42823 TTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 |||||||||| || || |||| || | ||| || || || |||||||| |||| | Sbjct 42416 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGAC 42475 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| |||||||| || || || || || || ||||| ||||| ||||| || Sbjct 42476 AAG-GTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGG 42534 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| ||||||||||| || || ||| | || || | ||| | || || Sbjct 42535 AATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCAC 42594 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | || ||||| ||||||||||| Sbjct 42595 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || ||||| | ||| ||| ||||||||||||||||||| Sbjct 31528 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 31587 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || | || || || |||||||||| ||||| ||||| ||| Sbjct 31588 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 31647 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||| ||||| || || || | || || | || | || || Sbjct 31648 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACC 31707 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| || || || || | |||||| ||||| ||||||||| Sbjct 31708 TCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 31755 >seq7187 Length=4100 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || ||||| | ||| ||| ||||||||||||||||||| Sbjct 616 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 675 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || | || || || |||||||||| ||||| ||||| ||| Sbjct 676 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 735 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| ||||| || || || | || || | || | || ||| Sbjct 736 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACT 795 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 796 TCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842 >seq7000 Length=1252665 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| || || || | || || || || || ||||| |||| Sbjct 319576 ACCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGA 319635 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | | || |||||||| | ||| || || ||||| || | ||| |||||||| ||| Sbjct 319636 TAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGG 319695 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| || || || | || |||| || |||| |||||| Sbjct 319696 AATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGAC 319755 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || || | ||| || || || |||||||| Sbjct 319756 CTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 319803 >seq7336 Length=62802 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| || || ||||| | || || || || ||||||| || || ||||| ||| Sbjct 18583 TCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAG 18642 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||||| || || || ||||| ||||||||||| |||||||||||| | Sbjct 18643 ATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTC 18702 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| | || | || || || || || || || || || || | ||||||||| Sbjct 18703 TCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACA 18762 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 18763 AAAATTTGCATT 18774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046563095615674