Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq11759 179 4e-40 >seq11759 Length=791511 Score = 179 bits (198), Expect = 4e-40 Identities = 406/603 (67%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 23497 TTAAACAATAAA-CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 ||||| ||||| ||||||||||| || |||||||| || | ||| |||| ||||| Sbjct 466061 TTAAA-AATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATT 466119 Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGA 23615 | ||| || | || ||||| | || || || || | ||| || || | ||||||||| Sbjct 466120 ACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGA 466179 Query 23616 TCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC 23675 || |||||||| | || ||||| || || || ||||| ||||| | | | ||| Sbjct 466180 ACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGC 466239 Query 23676 ATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGT 23735 || | || | |||||| | | ||||| |||||| |||||| | || Sbjct 466240 CTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGT 466299 Query 23736 TTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT--ATCTGTTATATATGTATCAATT 23793 || ||| || || || ||||| ||| |||| ||| | | || ||||| || Sbjct 466300 TTGAATGGCGTTAAACAGAAAGTCGCGTTC--CATTGGATCCTTGACGTAGGTATCGATC 466357 Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853 || | | ||||||||||||||||| ||||| | || | || | ||||||||||| Sbjct 466358 AGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAA 466417 Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913 | ||| || | | |||||| || ||| |||| | || || |||||| ||||| || Sbjct 466418 CGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATG 466477 Query 23914 CCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT 23973 |||||||| || || |||||||| | ||||| || || || | ||| || | | Sbjct 466478 CCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCA-TCATT 466536 Query 23974 AA-TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACT 24032 || ||| ||| ||| | | ||| || | || ||||||||| ||||| ||||| ||| Sbjct 466537 AAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGA 466596 Query 24033 TGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 || | || ||| || | ||||||||||| | ||| || || | | ||||| Sbjct 466597 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 466656 Query 24093 TCT 24095 ||| Sbjct 466657 TCT 466659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521402404263400