Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7336 167 6e-36 seq1039 156 1e-32 seq7187 118 3e-21 seq7000 105 2e-17 >seq7336 Length=62802 Score = 167 bits (184), Expect = 6e-36 Identities = 173/225 (77%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 |||| | |||||||| || || |||||||| |||||||| || ||||| ||||| || Sbjct 18778 AAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGA-- 18721 Query 177976 GCTCAGACA--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 || || | ||||||||||||| ||| ||| || || |||||||| ||||| || || Sbjct 18720 GCCAAGTGATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACC 18661 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 || || ||||| |||||||||||||| || ||| | || || || |||| || |||| Sbjct 18660 AGATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGA 18601 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| | ||||| || |||||||| ||||||||| | ||||| Sbjct 18600 CTATAATATTCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACT 18556 >seq1039 Length=57342 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| ||||| || || ||||| ||||| || ||||||||| | ||| Sbjct 43095 CAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGCGAC 43036 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||| ||||| || || || || |||||||||||| Sbjct 43035 ACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAA 42976 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||| | |||||||| |||| || | || || ||| | Sbjct 42975 CGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAACATT 42916 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || ||||| || |||||||| Sbjct 42915 CAAAAGGAGTCAACCCTCCATCTTGT 42890 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| |||||||| || || || || || || |||||||||||||| | ||| | | Sbjct 49148 CAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 49205 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || |||||||| || |||||||| ||||| || || ||||| ||||| |||| Sbjct 49206 ATTCGATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCAGC 49265 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || || |||||| | |||||||| | |||||| |||| || ||| Sbjct 49266 AGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAACA 49325 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| || |||||||| || || || Sbjct 49326 TTCAAAAGGAGTCAACACTTCACCTGGT 49353 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || ||||| ||||| || |||||||| || ||| Sbjct 31751 CAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGA--GCCCAGTG 31694 Query 177984 A--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| || || ||||| || || || ||||||| Sbjct 31693 ATTCGATAGAGAATGTGAAGGCGAAGATTCAAGATAAGGAAGGCATTCCACCAGACCAGC 31634 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || ||||| || ||||| ||| | |||||||| | || | | || || ||| Sbjct 31633 AACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACA 31574 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||||| || || |||||||| Sbjct 31573 TCCAAAAGGAATCCACCCTTCATCTTGT 31546 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || ||||| ||||| || || ||||| || ||| Sbjct 32207 CAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGA--GCCCAGTG 32150 Query 177984 A--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| ||||| || || || || || ||||||| Sbjct 32149 ATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAGC 32090 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || ||||| || ||||| ||| | |||||||| | || | | || || ||| Sbjct 32089 AACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACA 32030 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||||| || || |||||||| Sbjct 32029 TCCAAAAGGAATCCACCCTTCATCTTGT 32002 Score = 107 bits (118), Expect = 5e-18 Identities = 152/208 (73%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| |||||||| || || || || || || || || || |||||||| || || Sbjct 42411 CAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGA--GCCGAGTG 42354 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||| || ||||| || || || || || ||||||| Sbjct 42353 ACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAGC 42294 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 ||||| | |||||||| ||||| ||||| || ||||| | || |||| |||| || ||| Sbjct 42293 AACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCAC-CTTGTCCGACTACAAC 42235 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 42234 ATTCAGAAGGAGTCGACGCTTCA-CTTG 42208 Score = 102 bits (112), Expect = 2e-16 Identities = 151/208 (73%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| ||||| || || || |||||| | |||||||| || || Sbjct 42639 CAGATATTTGTTAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGA--GCCAAGTG 42582 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| || || || || || || || || ||||||| Sbjct 42581 ACTCGATAGAGAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAGC 42522 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 ||||| | || ||||| ||||| ||||| || ||||| | || |||| | ||||| ||| Sbjct 42521 AACGATTGATTTTCGCAGGAAAGCAGCTGGAGGATGGTCGCAC-CTTGTCTGATTACAAC 42463 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 42462 ATTCAGAAGGAGTCGACGCTTCA-CTTG 42436 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/208 (72%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || || || || |||||||| || || Sbjct 41955 CAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGA--GCCGAGTG 41898 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||| || ||||| || || || || || ||||||| Sbjct 41897 ACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAGC 41838 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 ||||| | |||||||| ||||| ||||| || ||||| | || |||| |||| || ||| Sbjct 41837 AACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCAC-CTTGTCCGACTACAAC 41779 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 41778 ATTCAGAAGGAGTCGACGCTTCA-CTTG 41752 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/208 (72%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || || || || |||||||| || || Sbjct 42183 CAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGA--GCCGAGTG 42126 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||| || ||||| || || || || || ||||||| Sbjct 42125 ACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAGC 42066 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 ||||| | |||||||| ||||| ||||| || ||||| | || |||| |||| || ||| Sbjct 42065 AACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCAC-CTTGTCCGACTACAAC 42007 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 42006 ATTCAGAAGGAGTCGACGCTTCA-CTTG 41980 >seq7187 Length=4100 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || ||||| ||||| || || ||||| || ||| Sbjct 839 CAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGA--GCCCAGTG 782 Query 177984 A--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| ||||| || || || || || ||||||| Sbjct 781 ATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAGC 722 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || ||||| || ||||| ||| | |||||||| | || | | || || ||| Sbjct 721 AACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACA 662 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||||| || || |||||||| Sbjct 661 TCCAAAAGGAATCCACCCTTCATCTTGT 634 >seq7000 Length=1252665 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||||||||| || || ||||| ||||| || ||||| ||| || || Sbjct 319800 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAACCTTCCGAT 319741 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || || |||||||||||||| || || || || || ||||| || Sbjct 319740 TCTATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGGATTCCGCCAGACCAACAG 319681 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || | || |||||| | | | | ||||| || | Sbjct 319680 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 319621 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || ||||| Sbjct 319620 CAGAAGGAGTCAACCCTTCACCTTGT 319595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203528683134414