Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq7336 167 6e-36
seq1039 156 1e-32
seq7187 118 3e-21
seq7000 105 2e-17
>seq7336
Length=62802
Score = 167 bits (184), Expect = 6e-36
Identities = 173/225 (77%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975
|||| | |||||||| || || |||||||| |||||||| || ||||| ||||| ||
Sbjct 18778 AAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGA-- 18721
Query 177976 GCTCAGACA--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033
|| || | ||||||||||||| ||| ||| || || |||||||| ||||| || ||
Sbjct 18720 GCCAAGTGATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACC 18661
Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093
|| || ||||| |||||||||||||| || ||| | || || || |||| || ||||
Sbjct 18660 AGATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGA 18601
Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| | ||||| || |||||||| ||||||||| | |||||
Sbjct 18600 CTATAATATTCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACT 18556
>seq1039
Length=57342
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| ||||| ||||| || || ||||| ||||| || ||||||||| | |||
Sbjct 43095 CAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGCGAC 43036
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || || |||||||| ||||| || || || || ||||||||||||
Sbjct 43035 ACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAA 42976
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||| || || || ||| | |||||||| |||| || | || || ||| |
Sbjct 42975 CGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAACATT 42916
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| || ||||| || ||||||||
Sbjct 42915 CAAAAGGAGTCAACCCTCCATCTTGT 42890
Score = 136 bits (150), Expect = 1e-26
Identities = 156/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
||||| |||||||| || || || || || || |||||||||||||| | ||| | |
Sbjct 49148 CAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 49205
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| | || |||||||| || |||||||| ||||| || || ||||| ||||| ||||
Sbjct 49206 ATTCGATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCAGC 49265
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || | ||||| || || |||||| | |||||||| | |||||| |||| || |||
Sbjct 49266 AGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAACA 49325
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
| ||||| || |||||||| || || ||
Sbjct 49326 TTCAAAAGGAGTCAACACTTCACCTGGT 49353
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| ||||| || || ||||| ||||| || |||||||| || |||
Sbjct 31751 CAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGA--GCCCAGTG 31694
Query 177984 A--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| | || ||||| || || |||||||| || || ||||| || || || |||||||
Sbjct 31693 ATTCGATAGAGAATGTGAAGGCGAAGATTCAAGATAAGGAAGGCATTCCACCAGACCAGC 31634
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| || ||||| || ||||| ||| | |||||||| | || | | || || |||
Sbjct 31633 AACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACA 31574
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
||||||| ||||| || || ||||||||
Sbjct 31573 TCCAAAAGGAATCCACCCTTCATCTTGT 31546
Score = 118 bits (130), Expect = 3e-21
Identities = 152/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | || || ||||| ||||| || || ||||| || |||
Sbjct 32207 CAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGA--GCCCAGTG 32150
Query 177984 A--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| | || ||||| || || |||||||| ||||| || || || || || |||||||
Sbjct 32149 ATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAGC 32090
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| || ||||| || ||||| ||| | |||||||| | || | | || || |||
Sbjct 32089 AACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACA 32030
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
||||||| ||||| || || ||||||||
Sbjct 32029 TCCAAAAGGAATCCACCCTTCATCTTGT 32002
Score = 107 bits (118), Expect = 5e-18
Identities = 152/208 (73%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| |||||||| || || || || || || || || || |||||||| || ||
Sbjct 42411 CAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGA--GCCGAGTG 42354
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || ||||| || || ||||| || ||||| || || || || || |||||||
Sbjct 42353 ACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAGC 42294
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
||||| | |||||||| ||||| ||||| || ||||| | || |||| |||| || |||
Sbjct 42293 AACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCAC-CTTGTCCGACTACAAC 42235
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
| || || || || || || || ||||
Sbjct 42234 ATTCAGAAGGAGTCGACGCTTCA-CTTG 42208
Score = 102 bits (112), Expect = 2e-16
Identities = 151/208 (73%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || || ||||| ||||| || || || |||||| | |||||||| || ||
Sbjct 42639 CAGATATTTGTTAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGA--GCCAAGTG 42582
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || |||||||| || ||||| || || || || || || || || |||||||
Sbjct 42581 ACTCGATAGAGAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAGC 42522
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
||||| | || ||||| ||||| ||||| || ||||| | || |||| | ||||| |||
Sbjct 42521 AACGATTGATTTTCGCAGGAAAGCAGCTGGAGGATGGTCGCAC-CTTGTCTGATTACAAC 42463
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
| || || || || || || || ||||
Sbjct 42462 ATTCAGAAGGAGTCGACGCTTCA-CTTG 42436
Score = 98.7 bits (108), Expect = 2e-15
Identities = 150/208 (72%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || || || || |||||||| || ||
Sbjct 41955 CAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGA--GCCGAGTG 41898
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || ||||| || || ||||| || ||||| || || || || || |||||||
Sbjct 41897 ACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAGC 41838
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
||||| | |||||||| ||||| ||||| || ||||| | || |||| |||| || |||
Sbjct 41837 AACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCAC-CTTGTCCGACTACAAC 41779
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
| || || || || || || || ||||
Sbjct 41778 ATTCAGAAGGAGTCGACGCTTCA-CTTG 41752
Score = 98.7 bits (108), Expect = 2e-15
Identities = 150/208 (72%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || || || || |||||||| || ||
Sbjct 42183 CAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGA--GCCGAGTG 42126
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || ||||| || || ||||| || ||||| || || || || || |||||||
Sbjct 42125 ACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAGC 42066
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
||||| | |||||||| ||||| ||||| || ||||| | || |||| |||| || |||
Sbjct 42065 AACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCAC-CTTGTCCGACTACAAC 42007
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
| || || || || || || || ||||
Sbjct 42006 ATTCAGAAGGAGTCGACGCTTCA-CTTG 41980
>seq7187
Length=4100
Score = 118 bits (130), Expect = 3e-21
Identities = 152/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | || || ||||| ||||| || || ||||| || |||
Sbjct 839 CAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGA--GCCCAGTG 782
Query 177984 A--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| | || ||||| || || |||||||| ||||| || || || || || |||||||
Sbjct 781 ATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAGC 722
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| || ||||| || ||||| ||| | |||||||| | || | | || || |||
Sbjct 721 AACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACA 662
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
||||||| ||||| || || ||||||||
Sbjct 661 TCCAAAAGGAATCCACCCTTCATCTTGT 634
>seq7000
Length=1252665
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| ||||||||||| || || ||||| ||||| || ||||| ||| || ||
Sbjct 319800 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAACCTTCCGAT 319741
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || ||||| || || |||||||||||||| || || || || || ||||| ||
Sbjct 319740 TCTATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGGATTCCGCCAGACCAACAG 319681
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || || || || || | || |||||| | | | | ||||| || |
Sbjct 319680 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 319621
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| || || |||||
Sbjct 319620 CAGAAGGAGTCAACCCTTCACCTTGT 319595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203528683134414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |