Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 154 1e-32
seq7336 123 2e-23
seq7000 82.4 7e-11
>seq1039
Length=57342
Score = 154 bits (170), Expect = 1e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| ||||| || | ||||| |||||| || |||||| |||||||| ||||||||
Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || | ||||||||| || || |||| || |||||||| | |||
Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| | ||||| |||| | | | ||| |||| ||||||
Sbjct 49479 ATGCCCTCCTTGTCT-TGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCAC 49421
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| ||| || || || || ||||| ||||| ||||| || ||||||
Sbjct 49420 CTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 49372
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || | ||| | ||||| || ||||| ||||||||||||||| ||||||||
Sbjct 41731 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 41790
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| | || || |||||||| || ||||| |||| || || ||||| | ||
Sbjct 41791 CAAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 41850
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || ||||||||| ||| || ||||| | | | ||| |||| ||||||
Sbjct 41851 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 41910
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| ||| || || || || || |||||||| || || |||||||||
Sbjct 41911 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 41959
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || | ||| | ||||| || ||||| ||||||||||||||| ||||||||
Sbjct 41959 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 42018
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| | || || |||||||| || ||||| |||| || || ||||| | ||
Sbjct 42019 CAAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42078
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || ||||||||| ||| || ||||| | | | ||| |||| ||||||
Sbjct 42079 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42138
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| ||| || || || || || |||||||| || || |||||||||
Sbjct 42139 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 42187
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || | ||| | ||||| || ||||| ||||||||||||||| ||||||||
Sbjct 42187 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 42246
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| | || || |||||||| || ||||| |||| || || ||||| | ||
Sbjct 42247 CAAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42306
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || ||||||||| ||| || ||||| | | | ||| |||| ||||||
Sbjct 42307 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42366
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| ||| || || || || ||||| ||||| ||||| || ||||||
Sbjct 42367 CTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 42415
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| || || || || |||||||| ||||| || || ||
Sbjct 41504 CCCCCACGAAGGCGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 41563
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || | ||||||||| || || |||| || |||||||| | |||
Sbjct 41564 AGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 41623
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| | || || |||| | | | ||| |||| ||||||
Sbjct 41624 ATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 41682
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| ||| || || || || || |||||||| || || |||||||||
Sbjct 41683 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 41731
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || | ||| | ||||| || ||||| ||||||||||||||| || || ||
Sbjct 42415 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGA 42474
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| | || || |||||||| || ||||| |||| || || ||||| | ||
Sbjct 42475 CAAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGG 42534
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || |||||| || ||| || ||||| | | | ||| || | ||||||
Sbjct 42535 AATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCAC 42594
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || || || || || || || ||||||||
Sbjct 42595 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| || || ||||| |||||| |||||||||||||| ||
Sbjct 42644 CCACCACGGAGTCGAAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAA 42703
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || | |||||| || ||||| |||| |||||||| || | |||
Sbjct 42704 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGA 42763
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| || |||||| ||| ||| || ||| | | | | || || | || ||
Sbjct 42764 ATGCCCTCCTTATCCTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCAACT 42823
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| |||||| || || || || || ||||| || || || |||||
Sbjct 42824 TCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||| ||||| || ||| ||||| || ||||| ||||| ||
Sbjct 31527 GCCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGA 31586
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| || || | || || | |||||| || || || |||||||| || ||||| | ||
Sbjct 31587 CAATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGG 31646
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCA 41813
|| || ||||| || ||| | || || |||| | | | || || | |||||
Sbjct 31647 AATGCCTTCCTTATCT-TGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCA 31705
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || ||||| || || || ||||| ||||| ||||||||
Sbjct 31706 CCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 31754
>seq7336
Length=62802
Score = 123 bits (136), Expect = 2e-23
Identities = 173/239 (72%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 41625 GTACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGT 41684
|||| ||| ||| || ||||| | || || ||||| || || |||||| ||||| |
Sbjct 18537 GTACTTCAT-GCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATAT 18595
Query 41685 TATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTT 41744
|||||||||||||||| ||| |||| || | |||||| |||||||| || || || ||||
Sbjct 18596 TATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTT 18655
Query 41745 GGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCG 41803
| || | || | | ||| |||| | || ||||||||| ||| | | | ||
Sbjct 18656 GATCTGGTGGTATTCCCTCTTTGT-CTTGGATTTTTGCTTTTACGTTCTCGATGGAATCA 18714
Query 41804 CTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | ||| ||||| | ||||| ||||| || || || ||||| || ||||| |||||
Sbjct 18715 CTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 18773
>seq7000
Length=1252665
Score = 82.4 bits (90), Expect = 7e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| || || || || |||||||||||| || || || ||
Sbjct 319577 CCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGAT 319636
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || || | |||||||| || || || || ||||||||||| | |||
Sbjct 319637 AAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGA 319696
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || | ||||| | | || ||| | || ||
Sbjct 319697 ATCCCCTCCTTGTCC-TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGAC 319755
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | || || ||||| || || || || || || ||||||||||||
Sbjct 319756 CTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCATG 319804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462228118577200
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