Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7169 262 4e-65 >seq7169 Length=15740 Score = 262 bits (290), Expect = 4e-65 Identities = 529/769 (69%), Gaps = 28/769 (4%) Strand=Plus/Plus Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACG 16854 || ||| || | || || || |||||||||||||||| ||| ||||||||||| || | Sbjct 6215 TCGATCAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCT 6274 Query 16855 TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT--A 16912 || || |||||||||| |||||| | || ||||| || || ||||| || ||||| | Sbjct 6275 AACAGGTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAATCAA 6334 Query 16913 CTAGCAACTCGTTC-CTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 || ||| || || | ||| | | | || | |||||||||| ||||| ||||| Sbjct 6335 CT--CAATGCGCTCTTTAGGAGGCTTCTTCACTATG-TGTTTAAACAGGAGACAAGCGAA 6391 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 || ||||| |||||||| |||||||| || ||||| ||| |||| || ||| ||||| Sbjct 6392 GTCACAATGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCAT 6451 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 |||||| ||||||| |||||| || || || || ||||| || || | |||||| Sbjct 6452 AAGTCCTCGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTC 6511 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG--TTACGAATCCAT 17149 ||| | |||||| |||| || ||||| || |||| | ||| | | || ||||| Sbjct 6512 GACTGCTGCAAAAGCGACTAGACGTTCTGCAAACGT--AGACTTAGAATCACCGATCCAG 6569 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC-TATGGCCTTAAA--- 17205 | | | |||||| || || | | ||||||| ||| | ||| || || || Sbjct 6570 TCCAGTGCCCACTGAGCCTTCTTAGCAACACAATCCA-GGTTACTTATTGCATTGAAAAG 6628 Query 17206 -TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 ||| ||||| |||| ||| | ||||| || ||||| | || | |||||||| Sbjct 6629 GAAATCTCTCTCTTTC----GAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTT 6684 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 |||||||||| ||||| || |||||||| | || || || || ||| |||| | || | Sbjct 6685 CGGAGTGTATATTCTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCT 6744 Query 17325 GAACTTC--CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 | ||||| || || || ||||| || || || ||||| || || || || || Sbjct 6745 GCACTTCTTGAC-TA-AAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGC 6802 Query 17383 GAAAAACGCCAATA--TATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAG 17440 ||| || || || | |||| | || |||| ||| || | | || | ||| Sbjct 6803 GAAGAATGCTAACACGTATGAT--ATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAA 6860 Query 17441 TCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500 || ||| || ||||||| ||| |||||||| ||||| || || || || || Sbjct 6861 TCAACTAAGTCCTTGGATAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTC 6920 Query 17501 TTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATC 17549 ||||| | | ||||| ||| | |||||||| ||||| | ||| ||| Sbjct 6921 TTATAAAACTGCCAAACATCGTGATATTGTATTGGGAAAAGTACAAATC 6969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516326980660920