Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7169 259 5e-64 >seq7169 Length=15740 Score = 259 bits (286), Expect = 5e-64 Identities = 609/912 (67%), Gaps = 62/912 (7%) Strand=Plus/Plus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 |||||| || | ||| |||||||| ||||| || || ||||| |||| ||||||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 15973 CATAAAATCAAAGGGATTAG--------------TAGCTGAAAATATCTTAG------AG 16012 |||||| || || || || ||| || || ||| | || || Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 16013 -------------TACCCCAGTTCCGTAACTAA---TCTATCTGCTACAAATTCTATATA 16056 || || ||||| |||||| || ||| || | || || || || Sbjct 6182 ACTCACCTTTTCATAACCAAGTTC---AACTAACAGTCGATCAGCGATGAACTCAATGTA 6238 Query 16057 TTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAA 16116 ||| |||||||| | |||||| |||||||| || | || || ||||||| | ||||| Sbjct 6239 TTGGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAA 6298 Query 16117 TTGTTGTTCTATCACAACCGCTTCTTTAATGATA---TCGGTG-GCTCGTGTTTCAGACG 16172 || ||||||||||| || |||||||| || || || || |||| || || | Sbjct 6299 CTGCTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAATGCGCTC----TTTAGGAG 6354 Query 16173 GTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTC 16232 | | | || ||||||||||| ||||| |||||||| ||||| | ||| || |||| Sbjct 6355 GCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTC 6414 Query 16233 TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGA 16292 |||| || ||||| || || | | ||| ||||| |||||| ||||||| ||| | Sbjct 6415 TGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAA 6474 Query 16293 ATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352 | || || ||||| || || || || | |||||| || | ||||||||||| || | Sbjct 6475 AGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGAC 6534 Query 16353 GTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTT 16412 |||| || |||||| | || || ||||| | | || |||| | || || | Sbjct 6535 GTTCTGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAG 6594 Query 16413 TTATACAATCCATCGTTTC-TATGGCCTTAAA----CAATTTCTCTTTTTCCTGAATATC 16467 | |||||||| ||| | ||| || || || ||| ||||| |||| || || Sbjct 6595 CAACACAATCCA-GGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTC--GA--GTC 6649 Query 16468 GATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTAT 16527 | ||||| || || || | ||| ||||||||| |||||||| ||||| || ||||| Sbjct 6650 CCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTAT 6709 Query 16528 CTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAATCGTTCC 16585 ||| | |||||||| || || | || | || || ||||| || ||||| ||||| Sbjct 6710 CTGCATACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGAC-TAAAA-CGTTCT 6767 Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATG 16645 | ||||||| ||||| || ||||||||||| || || || || | || || Sbjct 6768 AGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATA 6827 Query 16646 AAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACT 16705 |||| ||| | | | || | |||||| ||| || ||||||| ||| ||| Sbjct 6828 AAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACT 6887 Query 16706 TCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTAT 16765 ||||| ||||| || || || || || ||||| | | ||||| ||| | ||| Sbjct 6888 TCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATAT 6947 Query 16766 TGTA-TGGGAAA 16776 |||| ||||||| Sbjct 6948 TGTATTGGGAAA 6959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510210217261080