Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7169 215 6e-51 seq28879 134 2e-26 >seq7169 Length=15740 Score = 215 bits (238), Expect = 6e-51 Identities = 607/932 (65%), Gaps = 40/932 (4%) Strand=Plus/Plus Query 23824 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 23883 || ||||||| ||||| ||||||||| || || |||||||| || ||||| || | Sbjct 6040 CTCGAGACATGACTCCAGCACGTTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCT 6099 Query 23884 TACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGG----------TAAC---- 23929 | ||||||| ||||||||||||||| || ||| |||| ||| || | Sbjct 6100 TTCCTTCTATTGATATATTTTCCATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGA 6159 Query 23930 ----ATTATA-----------GATTC----TTTTAAATCCCAATTCAGAAATCAATCTAT 23970 |||||| || || ||| | | || | |||| | || || || Sbjct 6160 TGTAATTATATAAGTACGACAGACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGAT 6219 Query 23971 CTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTG 24030 | |||| ||||| || ||| ||| | || |||||||||||||| || |||| | Sbjct 6220 CAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAG 6279 Query 24031 GAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTA 24090 | ||||| | | | ||| | ||||| || ||| || ||| | ||||| | || | Sbjct 6280 GTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAATCAA-CTCA 6338 Query 24091 CTGTT-TCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 24149 || |||| | || | || || |||||||||| | ||| ||||| || || Sbjct 6339 ATGCGCTCTTTAGGAGGCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAA 6398 Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 || | ||||| ||||| || || | ||| || || | || || ||||| || || Sbjct 6399 TGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCT 6458 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 ||||| || |||||||| || | |||||| ||||| || || | || || ||||| Sbjct 6459 CGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCT 6518 Query 24270 GCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG----TCATGTATCCACTTTTGAGC 24325 ||||| || | || | |||| || ||| || ||| ||||| | | || Sbjct 6519 GCAAAAGCGACTAGACGTTCTGCA-AACGTAGACTTAGAATCACCGATCCAGTCCAGTGC 6577 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385 ||| | |||||||| |||||| || | ||| ||||| || || | | | | Sbjct 6578 CCACTGAGCCTTCTTAGCAACACAATCCAGGTTACTTATTGCATTGAAAAGGAAATCTCT 6637 Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 || || || ||| |||||| || || || | |||||||| || || || || Sbjct 6638 CTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATT 6697 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505 ||||| || || || | || |||||||| | | |||| ||||| |||||| || Sbjct 6698 CTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACT 6757 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 ||| |||||| ||| || ||| || ||||| ||||| || || || || || || || Sbjct 6758 AAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACAC 6817 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 24625 | | |||||||| ||| | | | || | ||||||| | || || || Sbjct 6818 GTATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGA 6877 Query 24626 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || ||| ||||||||||| ||||| || ||||| | || || ||||| | | ||| | Sbjct 6878 TAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAAC 6937 Query 24686 GTCATGATATTGAATTGGAAAAATAACAAATC 24717 || |||||||| ||||| |||| ||||||| Sbjct 6938 ATCGTGATATTGTATTGGGAAAAGTACAAATC 6969 >seq28879 Length=6601 Score = 134 bits (148), Expect = 2e-26 Identities = 183/254 (72%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATTACT 54297 |||||| ||| ||||||| || || | ||||| | ||| ||| ||||| ||| Sbjct 3482 ACCATTAGATTCACCATTCGTTCCAGCTATATAAGTACCAAGACTG---CGAATGTTATG 3426 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 | ||||||||||| || || ||||||| || | || ||| |||||| ||||| Sbjct 3425 CACGTTCAGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATC 3366 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 ||| || ||||| |||||||||||| |||| ||| || || || || || | ||| | Sbjct 3365 ATAAATCCCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGG 3306 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477 ||||| ||||| || | || |||||||| ||||||||||||||||| || | Sbjct 3305 TTTTGGTGTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACAT 3246 Query 54478 TAGATTGTACGTCT 54491 ||||||||| |||| Sbjct 3245 TAGATTGTATGTCT 3232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592323615699120