Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7169 159 4e-34 >seq7169 Length=15740 Score = 159 bits (176), Expect = 4e-34 Identities = 494/762 (65%), Gaps = 2/762 (0%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 || || | ||| || || ||||||| |||||||| | || | |||| | || || Sbjct 6979 AATCCGCACCGATTTGTACTTTTCCCAATACAATATCACGATGTTTGGCAGTTTTATAAG 6920 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 || || | || ||||||||||| || || || || || | ||||||||| || Sbjct 6919 AAAGCTGTAGCATCGTTCTGGACTGTGGAAGAAGTAGATTTATCCAAGGACTTAGTTGAT 6860 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| | | || | || || ||||| || ||||| | || || ||||| Sbjct 6859 TGGGACTCCCTCAAAGTGGGAGAACGTCATTTTATATCATACGTGTTAGCATTCTTCGCT 6800 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || || || || ||||| ||||| | | || ||||| ||| || |||||| | Sbjct 6799 GCAAGTGATGGAATCGTTCTTGAGAACTTACTAGAACGTTTTAGTCAAGAAGTGCAGATC 6740 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 |||| | || || ||||| || | ||||| || || ||||| | ||||| |||||| Sbjct 6739 CCCGAAGTCCGTTGTTTCTATGGTATGCAGATAGCTATTGAGAATATACACTCCGAAATG 6680 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA-AGCTCCGTTTGTTGAA 116952 || || | |||||||| || | | ||| | |||| || | || || || Sbjct 6679 TACTCCTTATTAATCGACACATATATTAGGGACTCGAAAGAGAGAGATTTCCTT-TTCAA 6621 Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 || || | || || || ||||||| ||||||| ||| |||||||| Sbjct 6620 TGCAATAAGTAACCTGGATTGTGTTGCTAAGAAGGCTCAGTGGGCACTGGACTGGATCGG 6561 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | || | | || | || || || || || || || || |||||||| || || Sbjct 6560 TGATTCTAAGTCTACGTTTGCAGAACGTCTAGTCGCTTTTGCAGCAGTCGAGGGTGTGTT 6501 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 || || || ||||| || || || |||||||| ||||| || || || ||||| || || Sbjct 6500 TTTCTCTGGTAGTTTTGCGGCTATCTTTTGGCTAAAGAAGCGAGGACTTATGCCGGGGCT 6441 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 | | ||||| || || ||||| ||| || ||||| ||||||| ||||| || ||| | Sbjct 6440 GTCATTCAGTAATGAACTCATAAGCAGAGATGAGGGATTGCATTGTGACTTCGCTTGTCT 6381 Query 117193 GCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGA 117252 ||||| || || | ||| || || | |||| | | ||| | | || Sbjct 6380 CCTGTTTAAACACATAGTGAAGAAGCCTCCTAAAGAGCGCATTGAGTTGATTATGAAAGA 6321 Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACT 117312 || |||| || || |||| || | | ||||| || || || | ||| | ||| | Sbjct 6320 AGCTGTCGTGATAGAACAGCAGTTTTTGTCGGAAGCTCTACCTGTTAGCCTGATAGGAAT 6261 Query 117313 CAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGA 117354 |||||| || |||| |||||||| |||||| |||| || Sbjct 6260 GAATTGCAAATTAATGTGCCAATACATTGAGTTCATCGCTGA 6219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514006058431440