Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3061 95.1 1e-14 seq28401 89.7 6e-13 seq27942 89.7 6e-13 seq141648 86.0 7e-12 seq76916 86.0 7e-12 seq4043 86.0 7e-12 seq1787 84.2 2e-11 seq162728 82.4 9e-11 >seq3061 Length=22250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| ||||||||||||||| || | || ||||||||||||| ||||||||||||| Sbjct 21216 CTCCTCGACAGGGAATCGAACCCGGGCATTCCACGTGACAGGCGGAGATACTCACCACTA 21275 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 21276 TACTATCGAGGA 21287 >seq28401 Length=6693 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| |||||| |||||| Sbjct 6559 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAAATACTCCCCACTA 6500 Query 60126 TACTACCGAGGA 60137 ||| |||||||| Sbjct 6499 TACGACCGAGGA 6488 >seq27942 Length=6783 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| ||||| ||| || |||||||||||||| | ||| || || | || || ||||| Sbjct 3788 ATGTAATGTCGACTCTTTCTGAATATTGTAATCCGACAGTGTTCGTCCATCTTCAAGCTG 3729 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||| ||||| || || ||||| || || | || | || ||||||| | ||| | | Sbjct 3728 TTTACCGGCGAAAATAAGACGCTGTTGATCTGGTGGTATGCCTTCCTTGT-CTTGAATCT 3670 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | | || | | | | | ||||| | ||| || || | || |||||||| |||| Sbjct 3669 TAGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAACTTCAAGGGTTATGGTTTTCCCCG 3610 Query 43159 TTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| || || ||||| || ||||| || Sbjct 3609 TTAGTGTTTTCACAAAAATCTGCATCTT 3582 >seq141648 Length=870 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||||| | ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 750 CTCCTCCACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 809 Query 60126 TACTACCGAGGA 60137 ||| | |||||| Sbjct 810 TACAATCGAGGA 821 >seq76916 Length=2315 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 2314 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 2255 Query 60126 TACTACCGAG 60135 ||| | |||| Sbjct 2254 TACAATCGAG 2245 >seq4043 Length=20009 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||||| | ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 14928 CTCCTCAACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 14987 Query 60126 TACTACCGAGGA 60137 ||| | |||||| Sbjct 14988 TACCATCGAGGA 14999 >seq1787 Length=26893 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| ||| | ||||||||||||| | || |||||||||||||||| |||| |||||||| Sbjct 22010 CTCATCGACCGGGAATCGAACCCATGCCTTCCGCGTGACAGGCGGAGATACCCACCACTA 22069 Query 60126 TACTACCGAGGATTGAATA 60144 ||| | ||||||| |||| Sbjct 22070 TACCATCGAGGATACAATA 22088 >seq162728 Length=695 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 60078 GAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||||| || || || ||||||||||||| |||||||||||||||||| |||||| Sbjct 1 GAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTATACTATCGAGGA 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570471191131320