Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7169 233 2e-56 >seq7169 Length=15740 Score = 233 bits (258), Expect = 2e-56 Identities = 577/871 (66%), Gaps = 47/871 (5%) Strand=Plus/Plus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||| ||||| | ||||| ||||||||||||||||| |||||||||| ||| |||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATA---------GTATTTAT------------- 16043 |||||| || || || || | ||| || ||| |||| Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 16044 -CGCATC---------CCAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTG 16092 | || | |||| | |||| || | || ||| || | || || || || || Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 16093 TTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtt 16152 |||||| | || ||||||||||| | ||||||| | ||||| | ||||| | Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 16153 tttttCTATATTAACCGCTTCAATGATTAT-ATCTCTTACTACACTATTTAACGGAGGGT 16211 | |||||| || ||||| | || || | ||| | | | || |||| ||||| | Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAACTC--AATGCGCTCTTTA--GGAGGCT 6357 Query 16212 TT---AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTAC 16268 | | || ||||||||||| | |||||| || |||||||||||||| || || || | Sbjct 6358 TCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGC 6417 Query 16269 TTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATA 16328 |||| | || || |||| || || ||||| |||||||| || || | |||||| | Sbjct 6418 TTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGA 6477 Query 16329 TAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCT 16388 |||| ||||| |||||| || || | ||| || ||||| ||||| || || | || | Sbjct 6478 TAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTT 6537 Query 16389 CACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAA 16448 | | |||| || | | ||||| | ||||| | || || | || Sbjct 6538 CTGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAA 6597 Query 16449 CACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATAT 16508 |||| | || ||| ||||||||| || | ||| | | ||||| || ||||| Sbjct 6598 CACAATCCAGGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATAT 6657 Query 16509 AAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAAC 16568 | || || |||| ||| |||||||| || || |||||||| || |||||||| | || Sbjct 6658 ATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCATAC 6717 Query 16569 CATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTT 16627 |||| || || | |||||| || || ||||| || ||||| | |||| |||||| Sbjct 6718 CATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAA-CGTTCTAGTAAGTTC 6776 Query 16628 TCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAt--ttt 16685 || ||| |||||||| || || || || || || | | || | ||||||| | Sbjct 6777 TCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGACGT 6836 Query 16686 tttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTA 16745 | || | ||| | | ||| ||| || || || |||||||| || ||||| | Sbjct 6837 TCTCCCACTTTGAGGGAGT--CCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCA 6894 Query 16746 CAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 ||||||| || || || ||||| || ||||| Sbjct 6895 CAGTCCAGAACGATGCTACAGCTTTCTTATA 6925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461422963463400