Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7169 237 2e-57 >seq7169 Length=15740 Score = 237 bits (262), Expect = 2e-57 Identities = 602/915 (66%), Gaps = 47/915 (5%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||| ||||| | ||||| |||||||||||| || || || ||||| | |||||||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 13975 CATAAAATCAAATGGATT--------------------TGTT-------------GACAT 14001 |||||| || ||||| || ||| |||| Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 14002 AAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTG 14061 | ||| || ||| |||| ||||| | || | || ||| || ||||||||||| ||||| Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 14062 AGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTC 14121 ||||||| | |||||||| ||||| || | ||||| | | | ||||| | Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 14122 TTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATA 14181 | |||||| ||||| || || ||||| | | ||| || |||| |||| | Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAATGCGCTCTTTAG---GAGGCTT 6358 Query 14182 TTT---TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 14238 || || |||||||| | | ||| || || |||||||| | ||||||||||| || Sbjct 6359 CTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCT 6418 Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298 || ||||| || |||| | || ||||| | |||||| || |||| |||||| || Sbjct 6419 TATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGAT 6478 Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358 || || || || || || || | ||||| ||||| ||||| || | || ||||| Sbjct 6479 AGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTC 6538 Query 14359 TCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14418 | |||||| | || | ||||| | ||||| | || || || || Sbjct 6539 TGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAAC 6598 Query 14419 AAAATCCATTGTTTC-AATAGCATTAAATAAATGTTCCTTCTCTTT--AGTACTTGAAAT 14475 | |||||| ||| | || ||||| || | || ||||||| ||| | | ||| Sbjct 6599 ACAATCCA-GGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCT--AAT 6655 Query 14476 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14535 ||||| || || | |||| |||||||| |||||||| || || ||||||||||| | Sbjct 6656 ATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCAT 6715 Query 14536 ACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAAT 14594 |||||| ||||| | |||| | || || || ||| ||||| | ||| || | Sbjct 6716 ACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAA-CGTTCTAGTAAGT 6774 Query 14595 TTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATT 14654 | ||| ||| || |||||||| || || || ||||| || | || | ||||| | Sbjct 6775 TCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGAC 6834 Query 14655 GCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAA 14714 | ||| | |||| | |||||| |||| ||||| || | ||||||||| || | Sbjct 6835 GTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCA 6894 Query 14715 CTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAG 14774 | ||||| || || |||||||| ||||| | ||| | || | |||| ||| | Sbjct 6895 CAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTG 6954 Query 14775 GAAAAACTACAAATC 14789 | |||| |||||||| Sbjct 6955 GGAAAAGTACAAATC 6969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481209863020920