Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7169 174 1e-38 seq27942 89.7 5e-13 seq28879 82.4 7e-11 >seq7169 Length=15740 Score = 174 bits (192), Expect = 1e-38 Identities = 507/775 (65%), Gaps = 12/775 (2%) Strand=Plus/Minus Query 57538 GATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAG 57597 ||||||| | || || || |||||| || ||||| | | || || || || | || Sbjct 6969 GATTTGTACTTTTCCCAATACAATATCACGATGTTTGGCAGTTTTATAAGAAAGCTGTAG 6910 Query 57598 CATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGC-GATTGGGATTCC 57656 ||||||| ||||| || ||||||||||| | || ||||| || || |||||||| ||| Sbjct 6909 CATCGTTCTGGACTGTGGAAGAAGTAGATTTATCCAAGGA-CTTAGTTGATTGGGACTCC 6851 Query 57657 CTCAAAGAATCTGAGAGAA----ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATC 57712 ||||||| || ||||| ||||||| | ||||||| || || ||||| ||| Sbjct 6850 CTCAAAG----TGGGAGAACGTCATTTTATATCATACGTGTTAGCATTCTTCGCTGCAAG 6795 Query 57713 CGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGA 57772 ||||| || ||| ||||| || | ||| | ||| ||||||||||| | | || Sbjct 6794 TGATGGAATCGTTCTTGAGAACTTACTAGAACGTTTTAGTCAAGAAGTGCAGATCCCCGA 6735 Query 57773 GGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTC 57832 | | || || || || | || | || ||||| || | || || |||||||| || Sbjct 6734 AGTCCGTTGTTTCTATGGTATGCAGATAGCTATTGAGAATATACACTCCGAAATGTACTC 6675 Query 57833 GCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGAT 57892 || | ||||| || || | | |||| | |||| | | || ||||| || || Sbjct 6674 CTTATTAATCGACACATATATTAGGGACTCGAAAGAGAGAGATTTCCTTTTCAATGCAAT 6615 Query 57893 -CGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCG 57951 | ||| | | | | || |||||||| ||||| || | | ||||| Sbjct 6614 AAGTAACCTGGATTGTG-TTGCTAAGAAGGCTCAGTGGGCACTGGACTGGATCGGTGATT 6556 Query 57952 CCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTT 58011 | | | | ||||| || || | ||| |||| || || || ||||| ||| | || || | Sbjct 6555 CTAAGTCTACGTTTGCAGAACGTCTAGTCGCTTTTGCAGCAGTCGAGGGTGTGTTTTTCT 6496 Query 58012 CGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGT 58071 | || || |||||||| || |||||| | ||||| || || || ||||| || ||| | | Sbjct 6495 CTGGTAGTTTTGCGGCTATCTTTTGGCTAAAGAAGCGAGGACTTATGCCGGGGCTGTCAT 6436 Query 58072 TTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT 58131 | || || || | ||| | || ||||| | ||| ||| || || || || ||| Sbjct 6435 TCAGTAATGAACTCATAAGCAGAGATGAGGGATTGCATTGTGACTTCGCTTGTCTCCTGT 6376 Query 58132 ACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGG 58191 ||||| || || || || | || ||||| | ||||| | || || | Sbjct 6375 TTAAACACATAGTGAAGAAGCCTCCTAAAGAGCGCATTGAGTTGATTATGAAAGAAGCTG 6316 Query 58192 TCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACA 58251 ||| ||| ||| | ||||| | | ||||| ||||| || | || | || ||||| Sbjct 6315 TCGTGATAGAACAGCAGTTTTTGTCGGAAGCTCTACCTGTTAGCCTGATAGGAATGAATT 6256 Query 58252 ATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT 58306 | || |||| | ||||||||||| | || || |||| || | ||||| Sbjct 6255 GCAAATTAATGTGCCAATACATTGAGTTCATCGCTGATCGACTGTTAGTTGAACT 6201 >seq27942 Length=6783 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || || || || || || ||||| || ||| | || |||||||| Sbjct 3582 AAGATGCAGATTTTTGTGAAAACACTAACGGGGAAAACCATAACCCTTGAAGTTGAACCT 3641 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | |||| | || | || || | || |||||||||||| | || || || Sbjct 3642 GCTGACACCATAGAGGCAGTGAAGGCTAAGATTCAAGACAAGGAAGGCATACCACCAGAT 3701 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || |||||||| || ||||| || |||||| | ||||| | | | || || ||||| Sbjct 3702 CAACAGCGTCTTATTTTCGCCGGTAAACAGCTTGAAGA-TGGACGAACACTGTCGGATTA 3760 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| ||||| | ||||| || ||| | || | || |||| Sbjct 3761 CAATATTCAGAAAGAGTCGACATTACATCTTGTTCTTCGTCTTCGTGGTGGTA 3813 >seq28879 Length=6601 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 |||||| || | ||| |||| || |||||||||||||| |||||| || || || || Sbjct 3796 TTCAACACGACGCATGAAAATGTCAGGTATCCATAGAGCAAAGAACAAATCTCGAGCTCG 3737 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || || ||| || || || || || | ||| | || || || | |||||| Sbjct 3736 AACTTCTTCAGCGCCTGTATTTTTGCGCATTTCTACAAACTGAAATACATCGGGATGCCA 3677 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | || | ||||| ||||| || | || ||||| || ||||| || || || Sbjct 3676 AGGTTCCAAATACATAGCAAATGCGCCTGGACGTTTGTTGCCTCCTTGATCAACATAGCG 3617 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 || || ||||| | || | | |||||| || Sbjct 3616 TGCAGTATTGTTAAATACGCGCAACATCGGAAC 3584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444716792862480