Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7169 219 5e-52 seq28879 114 2e-20 >seq7169 Length=15740 Score = 219 bits (242), Expect = 5e-52 Identities = 614/946 (65%), Gaps = 40/946 (4%) Strand=Plus/Plus Query 33271 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33330 || ||||||| ||||| ||||||||| || || |||||||| || ||||| || | Sbjct 6040 CTCGAGACATGACTCCAGCACGTTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCT 6099 Query 33331 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA-------- 33382 ||||||| | ||||||||||||||| || || || || ||| |||||| Sbjct 6100 TTCCTTCTATTGATATATTTTCCATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGA 6159 Query 33383 ---AAtt----------------------tttttAAATCCCAATTCAGAAATCAATCTAT 33417 |||| |||| | | || | |||| | || || || Sbjct 6160 TGTAATTATATAAGTACGACAGACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGAT 6219 Query 33418 CTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTG 33477 | |||| ||| || || ||| ||| | || |||||||||||||| || |||| | Sbjct 6220 CAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAG 6279 Query 33478 GAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAA 33537 | ||||| | | | ||| | ||||| || || || | | | ||||| || || Sbjct 6280 GTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAA 6339 Query 33538 CGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGT 33597 | |||| | || | | || |||||||||| | ||| ||||| || || | Sbjct 6340 TGCGCTCTTTAGGAGGCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAAT 6399 Query 33598 GCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCAC 33657 ||| ||||| ||||| || || | ||| ||| || | || || ||||| || || | Sbjct 6400 GCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTC 6459 Query 33658 GCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAG 33717 |||| || |||||||| || | || || || || || || | || || ||||| | Sbjct 6460 GCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTG 6519 Query 33718 CAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG----TCATGTATCCACTTTTGAGCC 33773 |||| || | || | ||| || ||| || ||| ||||| | | ||| Sbjct 6520 CAAAAGCGACTAGACGTTCTGCA-AACGTAGACTTAGAATCACCGATCCAGTCCAGTGCC 6578 Query 33774 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGttttt 33832 || | |||||||| |||||| || ||| || || ||||| || || | | | | Sbjct 6579 CACTGAGCCTTCTTAGCAACACAATCCAG-GTTACTTATTGCATTGAAAAGGAAATCTCT 6637 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 || || || ||| ||| || ||||| || | |||||||| || || || || Sbjct 6638 CTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATT 6697 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 ||||| || ||||| | || |||||||| | | |||| |||||||||||| || Sbjct 6698 CTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACT 6757 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 ||| |||||| ||| || ||| || ||||||||||| || || || || || || || Sbjct 6758 AAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACAC 6817 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 34072 | | |||||||| ||| | | | || | ||||||| | || || || Sbjct 6818 GTATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGA 6877 Query 34073 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 || ||| ||||||||||| ||||| || ||||| | || || ||||| | | ||| | Sbjct 6878 TAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAAC 6937 Query 34133 GTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 34178 || |||||||| |||||||||| ||||||| | ||||| ||| Sbjct 6938 ATCGTGATATTGTATTGGGAAAAGTACAAATCGGTGCGGATTGGGT 6983 >seq28879 Length=6601 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 |||||||| || || || ||||||| || | || ||| |||||| || ||||| || Sbjct 3418 AGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATCATAAATC 3359 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662 || || || |||||||| |||| ||| || || || || || | ||| | | Sbjct 3358 CCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGGTTTTGGT 3299 Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || |||||||| ||||||||||||||||| || | ||||||| Sbjct 3298 GTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACATTAGATTG 3239 Query 63723 TACGTCTCAAT 63733 || |||| ||| Sbjct 3238 TATGTCTAAAT 3228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628334623606320