Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq28879 122 8e-23 >seq28879 Length=6601 Score = 122 bits (134), Expect = 8e-23 Identities = 178/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 38226 TATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACT 38285 || ||||||||||| || || | || | |||||||||||| | || || ||| Sbjct 3485 TAGACCATTAGATTCACCATTCGTTCCAGCTATATAAGTACCAAGACTGCGAATGTTATG 3426 Query 38286 TATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATC 38345 | || ||||| ||||| |||| ||| ||||| | ||| |||| |||||| ||||| Sbjct 3425 CACGTTCAGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATC 3366 Query 38346 AAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGG 38405 | | || || || ||||| |||||||| |||| | | || ||||| || | ||| || Sbjct 3365 ATAAATCCCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGG 3306 Query 38406 CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAA 38465 ||| ||||| || || || | || ||||| ||||| | ||||||||||| |||| Sbjct 3305 TTTTGGTGTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACAT 3246 Query 38466 ATAATTATATGT 38477 ||| ||||| Sbjct 3245 TAGATTGTATGT 3234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467421605649360