Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7169 212 8e-50 seq28879 129 8e-25 >seq7169 Length=15740 Score = 212 bits (234), Expect = 8e-50 Identities = 606/932 (65%), Gaps = 40/932 (4%) Strand=Plus/Plus Query 35847 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 35906 || ||||||| ||||| ||||||||| || || |||||||| || ||||| || | Sbjct 6040 CTCGAGACATGACTCCAGCACGTTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCT 6099 Query 35907 TACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG----------ATAAC---- 35952 | ||||||| ||||||||||||||| || |||||||| ||| ||| | Sbjct 6100 TTCCTTCTATTGATATATTTTCCATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGA 6159 Query 35953 ----ATTATA-AAtt--------------tttttAAATCCCAATTCAGAAATCAATCTAT 35993 |||||| || | |||| | | || | |||| | || || || Sbjct 6160 TGTAATTATATAAGTACGACAGACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGAT 6219 Query 35994 CTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTG 36053 | |||| || || || ||| ||| | || |||||||||||||| || |||| | Sbjct 6220 CAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAG 6279 Query 36054 GAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTA 36113 | ||||| | | | ||| | ||||| || ||| || ||| | ||||| | | | Sbjct 6280 GTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAAT-CAACTCA 6338 Query 36114 CTG-TTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 36172 || |||| | || | || || |||||||||| | ||| ||||| || || Sbjct 6339 ATGCGCTCTTTAGGAGGCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAA 6398 Query 36173 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 36232 || | ||||| ||||| || || | ||| || || | || || ||||| || || Sbjct 6399 TGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCT 6458 Query 36233 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 36292 ||||| || |||||||| || | |||||| ||||| || || | || || ||||| Sbjct 6459 CGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCT 6518 Query 36293 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATGTATCCACTTTTGAGC 36348 ||||| || | || | ||| || ||| ||| ||| ||||| | | || Sbjct 6519 GCAAAAGCGACTAGACGTTCTGCA-AACGTAGACTTAGAATCACCGATCCAGTCCAGTGC 6577 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 36408 ||| | |||||||| |||||| || | ||| ||||| || || | | | | Sbjct 6578 CCACTGAGCCTTCTTAGCAACACAATCCAGGTTACTTATTGCATTGAAAAGGAAATCTCT 6637 Query 36409 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 || || || ||| |||||| || || || | |||||||| || || || || Sbjct 6638 CTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATT 6697 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 36528 ||||| || || || | || |||||||| | | |||| ||||| |||||| || Sbjct 6698 CTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACT 6757 Query 36529 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 36588 ||| |||||| ||| || ||| || ||||| ||||| || || || || || || || Sbjct 6758 AAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACAC 6817 Query 36589 ATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 36648 | | |||||||| ||| | | || | ||||||| | || || || Sbjct 6818 GTATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGA 6877 Query 36649 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 || ||| ||||||||||| ||||| || ||||| | || || ||||| | | ||| | Sbjct 6878 TAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAAC 6937 Query 36709 GTCATGATATTGAATTGGAAAAATAACAAATC 36740 || |||||||| ||||| |||| ||||||| Sbjct 6938 ATCGTGATATTGTATTGGGAAAAGTACAAATC 6969 >seq28879 Length=6601 Score = 129 bits (142), Expect = 8e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 |||||||| || || || ||||||| || | || ||| |||||| |||||||| || Sbjct 3418 AGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATCATAAATC 3359 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 ||||| |||||||||||| |||| ||| || || || || || | ||| | Sbjct 3358 CCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGGTTTTGGT 3299 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | || |||||||| ||||||||||||||||| || | ||||||| Sbjct 3298 GTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACATTAGATTG 3239 Query 66516 TACGTCTCAAT 66526 || |||| ||| Sbjct 3238 TATGTCTAAAT 3228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656623058097960