Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq27942 87.8 2e-12 seq7169 84.2 2e-11 >seq27942 Length=6783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| ||||| || ||||| || ||| | || | ||||| ||||||||||| Sbjct 3781 GTCGACTCTTTCTGAATATTGTAATCCGACAGTGTTCGTCCA-TCTTCAAGCTGTTTACC 3723 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || | || ||||| || ||||| || ||||||||||| ||||| ||| | || | | Sbjct 3722 GGCGAAAATAAGACGCTGTTGATCTGGTGGTATGCCTTCCTTGTC-TTGAATCTTAGCCT 3664 Query 139687 TAGCTG-TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | ||| || | ||||| | || || || |||| ||| | || || || || | | Sbjct 3663 TCACTGCCTCTATGGTGTCAGCAGGTTCAACTTCAAGGGTTATGGTTTTCCCCGTTAGTG 3604 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| || || || ||||| Sbjct 3603 TTTTCACAAAAATCTGCAT 3585 >seq7169 Length=15740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 || |||| | | |||||| || | ||||||| | || | || ||||| |||||| Sbjct 6592 AAGAAGGCTCAGTGGGCACTGGACTGGATCGGTGATTCTAAGTCTACGTTTGCAGAACGT 6533 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTT 52683 || ||||| ||||| ||| || ||||||||||| || |||||||||||||| || ||| Sbjct 6532 CTAGTCGCTTTTGCAGCAGTCGAGGGTGTGTTTTTCTCTGGTAGTTTTGCGGCTATCTTT 6473 Query 52684 T 52684 | Sbjct 6472 T 6472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494895961504800