Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7169 233 3e-56 seq28879 123 4e-23 >seq7169 Length=15740 Score = 233 bits (258), Expect = 3e-56 Identities = 618/945 (65%), Gaps = 38/945 (4%) Strand=Plus/Plus Query 49649 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 49708 || ||||||| ||||| ||||||||| || || |||||||| || ||||| || | Sbjct 6040 CTCGAGACATGACTCCAGCACGTTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCT 6099 Query 49709 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGG----------TAAC---- 49754 ||||||| | ||||||||||||||| || || || || ||| || | Sbjct 6100 TTCCTTCTATTGATATATTTTCCATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGA 6159 Query 49755 ----ATTATA-AAtt--------------tttttAAATCCCAATTCAGAAATCAATCTAT 49795 |||||| || | |||| | | || | |||| | || || || Sbjct 6160 TGTAATTATATAAGTACGACAGACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGAT 6219 Query 49796 CCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTG 49855 | |||| || || || ||| ||| | || |||||||||||||| || |||| | Sbjct 6220 CAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAG 6279 Query 49856 GAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAA 49915 | ||||| | | | ||| | ||||| || || || ||| | ||||| | || Sbjct 6280 GTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAA 6339 Query 49916 CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGT 49975 | |||| | || | || || |||||||||| | ||| ||||| || || | Sbjct 6340 TGCGCTCTTTAGGAGGCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAAT 6399 Query 49976 GCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCAC 50035 ||| ||||| ||||| || || ||||| || || | || || ||||| || || | Sbjct 6400 GCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTC 6459 Query 50036 GCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGG 50095 |||| || |||||||| || | |||||| ||||| || || | || || ||||| | Sbjct 6460 GCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTG 6519 Query 50096 CAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG---TCATGTATCCACTTTTGAGCCC 50152 |||| || || || | ||| || | | | | ||| ||||| | | |||| Sbjct 6520 CAAAAGCGACTAGACGTTCTGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCC 6579 Query 50153 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGtttttt 50211 | | |||||||| |||||| || ||| || || ||||| || || | | | | Sbjct 6580 ACTGAGCCTTCTTAGCAACACAATCCAG-GTTACTTATTGCATTGAAAAGGAAATCTCTC 6638 Query 50212 tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 || || || ||| ||| || ||||| || | |||||||| || || || || Sbjct 6639 TCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTC 6698 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 ||||| || ||||| | || |||||||| | | |||| |||||||||||| || | Sbjct 6699 TCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTA 6758 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || ||||| ||| || ||| || ||||| ||||| || || || || || || || Sbjct 6759 AAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACG 6818 Query 50392 TGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 50451 | | ||||||||| ||| | | || | ||||||| | || || ||| Sbjct 6819 TATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGAT 6878 Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 50511 | ||||||||||||||| ||||| || ||||| | || || ||||| | | ||| | Sbjct 6879 AAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACA 6938 Query 50512 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 || |||||||| |||||||||| ||||||| | ||||| ||| Sbjct 6939 TCGTGATATTGTATTGGGAAAAGTACAAATCGGTGCGGATTGGGT 6983 >seq28879 Length=6601 Score = 123 bits (136), Expect = 4e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 |||||||| || || || ||||||| || | || ||| |||||| |||||||| || Sbjct 3418 AGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATCATAAATC 3359 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 ||||| || |||||||| |||| ||| || || || || || | ||| | Sbjct 3358 CCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGGTTTTGGT 3299 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | || |||||||| ||||||||||||||||| |||| ||||||| Sbjct 3298 GTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACATTAGATTG 3239 Query 80395 TACGTCTCAAT 80405 || |||| ||| Sbjct 3238 TATGTCTAAAT 3228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716577555305160