Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7169 246 3e-60 >seq7169 Length=15740 Score = 246 bits (272), Expect = 3e-60 Identities = 604/915 (66%), Gaps = 47/915 (5%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||| ||||| | ||||| |||||||||||| || || || ||||| | |||||||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 13643 CATAAAATCAAATGGATTT-----------------------ATT----------GACAT 13669 |||||| || ||||| || ||| |||| Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 13670 AAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTG 13729 | ||| || ||| |||| ||||| | || | || |||||| || |||||||| ||||| Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 13730 AGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTC 13789 ||||||| | |||||||| ||||| || | ||||| | | | ||||| | Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 13790 TTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATA 13849 | |||||| ||||| ||||| ||||| | ||| ||| |||| |||| | Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAATGCGCTCTTTAG---GAGGCTT 6358 Query 13850 TTT---TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13906 || || |||||||| | | ||| || || |||||||| | ||||||||||| || Sbjct 6359 CTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCT 6418 Query 13907 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13966 || ||||| || |||| | || ||||| | |||||| || |||| |||||| || Sbjct 6419 TATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGAT 6478 Query 13967 TGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14026 || ||||| || || || || | ||||| ||||| ||||| || | || ||||| Sbjct 6479 AGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTC 6538 Query 14027 TCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14086 | |||||| | || | ||||| | ||||| | || || || || Sbjct 6539 TGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAAC 6598 Query 14087 AAAATCCATTGTTTC-AATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAAT 14143 | |||||| ||| | || ||||| || | | || ||||||| ||| | | ||| Sbjct 6599 ACAATCCA-GGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCT--AAT 6655 Query 14144 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14203 ||||| || || | |||| |||||||| |||||||| || || ||||||||||| | Sbjct 6656 ATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCAT 6715 Query 14204 ACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAAT 14262 |||||| || || | |||| | || ||||| || ||||| | ||| || | Sbjct 6716 ACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAA-CGTTCTAGTAAGT 6774 Query 14263 TTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATT 14322 | ||| ||| || |||||||| || || || ||||| || | || | ||||| | Sbjct 6775 TCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGAC 6834 Query 14323 GCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAA 14382 | ||| | ||||| | |||||| ||| ||||| || | ||||||||| || | Sbjct 6835 GTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCA 6894 Query 14383 CTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAG 14442 | ||||| || || |||||||| ||||| | ||| | || | |||| ||| | Sbjct 6895 CAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTG 6954 Query 14443 GAAAAACTACAAATC 14457 | |||| |||||||| Sbjct 6955 GGAAAAGTACAAATC 6969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478598426454600