Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7169 268 9e-67 >seq7169 Length=15740 Score = 268 bits (296), Expect = 9e-67 Identities = 609/915 (67%), Gaps = 47/915 (5%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||| ||||| | ||||| ||||||||| || || || || ||||| | |||||||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 13431 CATAAAATCGAATGGATT--------------------TGTT-------------GACAT 13457 |||||| |||||||| || ||| |||| Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 13458 AAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTG 13517 | ||| || ||| |||| ||||| | ||| | || |||||| || |||||||| ||||| Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 13518 AGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTC 13577 ||||||| | |||||||| ||||| || | ||||| | | | ||||| | Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 13578 TTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATA 13637 | |||||| ||||| || || ||||| | || ||| || |||| |||| | Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAATGCGCTCTTTAG---GAGGCTT 6358 Query 13638 TTT---TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13694 || || |||||||| | | ||| || || |||||||| | ||||||||||| || Sbjct 6359 CTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCT 6418 Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 || ||||| || |||| | || ||||| | |||||| || |||| |||||| || Sbjct 6419 TATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGAT 6478 Query 13755 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814 || || || || || || || | ||||| ||||| ||||| || | ||| ||||| Sbjct 6479 AGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTC 6538 Query 13815 TCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 13874 | |||||| | || | ||||| | ||||| | || || || || Sbjct 6539 TGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAAC 6598 Query 13875 AAAATCCATTGTTTC-GATTGCATTGAATAAATGTTCCTTCTCTTT--AGTACTTGAAAT 13931 | |||||| ||| | ||||||||||| | || ||||||| ||| | | ||| Sbjct 6599 ACAATCCA-GGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCT--AAT 6655 Query 13932 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAA 13991 ||||| || || | |||| |||||||| |||||||| || || ||||||||||| | Sbjct 6656 ATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCAT 6715 Query 13992 ACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGT 14050 |||||| ||||| | |||| | || || || || ||||| | |||| |||| Sbjct 6716 ACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAA-CGTTCTAGTAAGT 6774 Query 14051 TTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATT 14110 | ||| ||| || |||||||| || || || ||||| || | || | ||||| | Sbjct 6775 TCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGAC 6834 Query 14111 GCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAA 14170 | ||| | ||||| | |||||| |||| ||||| || | ||||||||| || | Sbjct 6835 GTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCA 6894 Query 14171 CTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAG 14230 | ||||| || || |||||||| ||||| | ||| | || | |||| ||| | Sbjct 6895 CAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTG 6954 Query 14231 GAAAAACTACAAATC 14245 | |||| |||||||| Sbjct 6955 GGAAAAGTACAAATC 6969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477461908829160