Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09-
24] 188,369 sequences; 701,762,036 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq7169 268 9e-67
>seq7169
Length=15740
Score = 268 bits (296), Expect = 9e-67
Identities = 609/915 (67%), Gaps = 47/915 (5%)
Strand=Plus/Plus
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||| ||||| | ||||| ||||||||| || || || || ||||| | ||||||||||||
Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121
Query 13431 CATAAAATCGAATGGATT--------------------TGTT-------------GACAT 13457
|||||| |||||||| || ||| ||||
Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181
Query 13458 AAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTG 13517
| ||| || ||| |||| ||||| | ||| | || |||||| || |||||||| |||||
Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241
Query 13518 AGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTC 13577
||||||| | |||||||| ||||| || | ||||| | | | ||||| |
Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301
Query 13578 TTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATA 13637
| |||||| ||||| || || ||||| | || ||| || |||| |||| |
Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAATGCGCTCTTTAG---GAGGCTT 6358
Query 13638 TTT---TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13694
|| || |||||||| | | ||| || || |||||||| | ||||||||||| ||
Sbjct 6359 CTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCT 6418
Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754
|| ||||| || |||| | || ||||| | |||||| || |||| |||||| ||
Sbjct 6419 TATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGAT 6478
Query 13755 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814
|| || || || || || || | ||||| ||||| ||||| || | ||| |||||
Sbjct 6479 AGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTC 6538
Query 13815 TCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 13874
| |||||| | || | ||||| | ||||| | || || || ||
Sbjct 6539 TGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAAC 6598
Query 13875 AAAATCCATTGTTTC-GATTGCATTGAATAAATGTTCCTTCTCTTT--AGTACTTGAAAT 13931
| |||||| ||| | ||||||||||| | || ||||||| ||| | | |||
Sbjct 6599 ACAATCCA-GGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCT--AAT 6655
Query 13932 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAA 13991
||||| || || | |||| |||||||| |||||||| || || ||||||||||| |
Sbjct 6656 ATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCAT 6715
Query 13992 ACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGT 14050
|||||| ||||| | |||| | || || || || ||||| | |||| ||||
Sbjct 6716 ACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAA-CGTTCTAGTAAGT 6774
Query 14051 TTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATT 14110
| ||| ||| || |||||||| || || || ||||| || | || | ||||| |
Sbjct 6775 TCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGAC 6834
Query 14111 GCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAA 14170
| ||| | ||||| | |||||| |||| ||||| || | ||||||||| || |
Sbjct 6835 GTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCA 6894
Query 14171 CTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAG 14230
| ||||| || || |||||||| ||||| | ||| | || | |||| ||| |
Sbjct 6895 CAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTG 6954
Query 14231 GAAAAACTACAAATC 14245
| |||| ||||||||
Sbjct 6955 GGAAAAGTACAAATC 6969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477461908829160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |