Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7169 253 3e-62 seq28879 136 5e-27 >seq7169 Length=15740 Score = 253 bits (280), Expect = 3e-62 Identities = 626/947 (66%), Gaps = 42/947 (4%) Strand=Plus/Plus Query 41754 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCT 41813 || ||||||| ||||| ||||||||| || || |||||||| || ||||| |||| Sbjct 6040 CTCGAGACATGACTCCAGCACGTTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCT 6099 Query 41814 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGG----------TAAC---- 41859 ||||||| | ||||||||||||||| || || || || ||| || | Sbjct 6100 TTCCTTCTATTGATATATTTTCCATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGA 6159 Query 41860 ----ATTATA-AAtt--------------tttttAAATCCCAATTCAGAAATCAATCTAT 41900 |||||| || | |||| | | || | |||| | || || || Sbjct 6160 TGTAATTATATAAGTACGACAGACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGAT 6219 Query 41901 CTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTG 41960 | |||||||| || || ||| ||| | || |||||||||||||| || |||| | Sbjct 6220 CAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAG 6279 Query 41961 GAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTA 42020 | ||||| | | | ||| | ||||| || ||| || ||| | ||||| | || | Sbjct 6280 GTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAATCAA-CTCA 6338 Query 42021 CTGTT-TCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 42079 || |||| | || | || || |||||||||| | ||| ||||| || || Sbjct 6339 ATGCGCTCTTTAGGAGGCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAA 6398 Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139 |||| ||||||||||| || || | ||| || || | || || ||||| || || Sbjct 6399 TGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCT 6458 Query 42140 CGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCC 42199 ||||| || |||||||| |||| |||||| ||||| || || | || || ||||| Sbjct 6459 CGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCT 6518 Query 42200 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATGTATCCACTTTTGAGC 42255 ||||| || | || | ||| || ||| ||| ||| ||||| | | || Sbjct 6519 GCAAAAGCGACTAGACGTTCTGCA-AACGTAGACTTAGAATCACCGATCCAGTCCAGTGC 6577 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttt 42314 ||| | |||||||| |||||| || ||| | ||| ||||| || || | | | Sbjct 6578 CCACTGAGCCTTCTTAGCAACACAATCCA-GGTTACTTATTGCATTGAAAAGGAAATCTC 6636 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 | || || || ||| |||||| ||||| || | |||||||| || || || | Sbjct 6637 TCTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATAT 6696 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 | ||||| || ||||| | || |||||||| | | | |||| | ||| |||||| || Sbjct 6697 TCTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGAC 6756 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 ||| ||||| ||| || || || ||||| ||||| || || || || || || | Sbjct 6757 TAAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACA 6816 Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAG 42554 | | | |||||||| ||| || | | | | ||||||| | || || | Sbjct 6817 CGTATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGG 6876 Query 42555 ATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGA 42614 ||| |||||||||||| || ||||| || |||||| | || || ||||| | | ||| | Sbjct 6877 ATAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAA 6936 Query 42615 TATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGT 42661 ||| |||||||| |||||||||| ||||||| | ||||| ||| Sbjct 6937 CATCGTGATATTGTATTGGGAAAAGTACAAATCGGTGCGGATTGGGT 6983 >seq28879 Length=6601 Score = 136 bits (150), Expect = 5e-27 Identities = 188/260 (72%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATT--G 72288 |||||| ||| ||||||| || || | ||||| | ||| ||| ||||| || | Sbjct 3482 ACCATTAGATTCACCATTCGTTCCAGCTATATAAGTACCAAGACTG---CGAATGTTATG 3426 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 | || | ||||||| || || || ||||||| || | || ||| |||||| ||| Sbjct 3425 CACGTTCA--GACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTA 3368 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408 ||||| || ||||| |||||||||||| |||| ||| || || || || || | ||| Sbjct 3367 TCATAAATCCCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGT 3308 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 | ||||| ||||| || | || |||||||| ||||||||||||||||| ||| Sbjct 3307 GGTTTTGGTGTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGAC 3248 Query 72469 AGTAGATTGTACGTCTCAAT 72488 | ||||||||| |||| ||| Sbjct 3247 ATTAGATTGTATGTCTAAAT 3228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669558927250440