Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq27942 93.3 4e-14 >seq27942 Length=6783 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | ||| | ||| || ||||| || || |||||||| | Sbjct 3811 CCACCACGAAGACGAAGAACAAGATGTAATGTCGACTCTTTCTGAATATTGTAATCCGAC 3752 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| || |||||||| || | || ||||| || ||||| || || Sbjct 3751 AGTGTTCGTCCA-TCTTCAAGCTGTTTACCGGCGAAAATAAGACGCTGTTGATCTGGTGG 3693 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTA 143135 ||||||||| ||||| | | | || | || ||| || | ||||| | ||||| | Sbjct 3692 TATGCCTTCCTTGTC-TTGAATCTTAGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAA 3634 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || | || || || || | |||||| || || || ||||| Sbjct 3633 CTTCAAGGGTTATGGTTTTCCCCGTTAGTGTTTTCACAAAAATCTGCAT 3585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505820577556080