Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7169 141 1e-28 seq28879 91.5 2e-13 >seq7169 Length=15740 Score = 141 bits (156), Expect = 1e-28 Identities = 485/753 (64%), Gaps = 26/753 (3%) Strand=Plus/Minus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 ||||| || ||||| | | || || || ||| || || || ||||| || ||||| Sbjct 6946 TATCACGATGTTTGGCAGTTTTATAAGAAAGCTGTAGCATCGTTCTGGACTGTGGAAGAA 6887 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 || ||| | ||||||||| | |||||||| ||| || ||| || | || | Sbjct 6886 GTAGATTTATCCAAGGACTTAGTTGATTGGGA--CTCC-----CTCAAAGTGGGAGAACG 6834 Query 125130 T----TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA 125185 | ||||||| || | || || ||||| || | ||||||||||| || || Sbjct 6833 TCATTTTATATCATACGTGTTAGCATTCTTCGCTGCAAGTGATGGAATCGTTCTTGAGAA 6774 Query 125186 TCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATT 125245 | | ||| || |||||| || || || || || || || || || | Sbjct 6773 CTTACTAGAACGTTTTAGTCAAGAAGTGCAGATCCCCGAAGTCCGTTGTTTCTATGGTAT 6714 Query 125246 CCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || || |||||||| | ||||| ||||||||||| | | || |||| || || Sbjct 6713 GCAGATAGCTATTGAGAATATACACTCCGAAATGTACTCCTTATTAATCGACACATATAT 6654 Query 125306 TCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACG 125365 | | || || || | | | | || || || ||||| | || | | | Sbjct 6653 TAGGGACTCGAAAGAGAGAGATTTCCTTTTCAATGCAATAAGTAACCTGGATTGTGTTGC 6594 Query 125366 TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAG 125425 ||| |||||||| |||| | ||||||| ||| |||||| ||| || || | Sbjct 6593 TAAGAAGGCTCAGTGGGCACTGGACTGGATCGGTGATTCTAAGTCTACGTTTGCAGAACG 6534 Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485 || || || || || || || ||||| | || || || |||||||||||||| ||||| Sbjct 6533 TCTAGTCGCTTTTGCAGCAGTCGAGGGTGTGTTTTTCTCTGGTAGTTTTGCGGCTATCTT 6474 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 |||||| |||||||| ||||| ||||| || ||| | |||||| || | ||| | Sbjct 6473 TTGGCTAAAGAAGCGAGGACTTATGCCGGGGCTGTCATTCAGTAATGAACTCATAAGCAG 6414 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA 125605 ||| ||||| | || |||||||| || ||| |||||| ||| | | Sbjct 6413 AGATGAGGGATTGCATTGTGACTTCGCTTGTCTCCTGTTT--AAAC---------ACATA 6365 Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAA---CATTGTAACCGATGCCGTGAGGATAGA 125662 ||| ||| | | | || || ||| | ||| | | || || || |||||| Sbjct 6364 GTGAAGAAGCCTC-CTAAAGAGCGCATTGAGTTGATTATGAAAGAAGCTGTCGTGATAGA 6306 Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAAT 125722 ||| ||||| | | ||| | ||||| || ||| |||| || ||||| ||||| |||| Sbjct 6305 ACAGCAGTTTTTGTCGGAAGCTCTACCTGTTAGCCTGATAGGAATGAATTGCAAATTAAT 6246 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 |||| | ||||| ||||| | || ||||| || Sbjct 6245 GTGCCAATACATTGAGTTCATCGCTGATCGACT 6213 >seq28879 Length=6601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 96862 CACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAAC 96921 |||| || ||| || || ||||| ||||| |||||||| | || | || ||||||| Sbjct 3615 CACGCTATGTTGATCAAGGAGGCAACAAACGTCCAGGCGCATTTGCTATGTATTTGGAAC 3674 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 ||||||| | || || ||| | ||| | || ||||||||||| | ||| |||||| | Sbjct 3675 CTTGGCATCCCGATGTATTTCAGTTTGTAGAAATGCGCAAAAATACAGGCGCTGAAGAAG 3734 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATG 97031 ||||| | || ||||| | ||| || ||| | || || | |||||| Sbjct 3735 TTCGAGCTCGAGATTTGTTCTTTGCTCTATGGATACCTGACATTTTCATG 3784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739314292744440