Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq27942 104 2e-17 >seq27942 Length=6783 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || || ||||| || |||||||||||||||| || |||| | || || |||||| Sbjct 3787 TGTAATGTCGACTCTTTCTGAATATTGTAATCCGACAGTGTTCGTCCATCTTCAAGCTGT 3728 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| || ||||||| | ||| ||||| || | ||| || ||||| ||| || Sbjct 3727 TTACCGGCGAAAATAAGACGCTGTTGATCTGGTGGTATGCCTTCCTTGTCTTGAATCTT- 3669 Query 18959 TGTTTTACCTGGC-CGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 | || ||| | | | || || |||| || ||| | ||| |||||||| || || Sbjct 3668 AGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAACTTCAAGGGTTATGGTTTTCCCCGT 3609 Query 19018 TAAAGTTTTGACAAAAATTTGCATTTTAAATCTC 19051 || ||||| |||||||| ||||| || |||||| Sbjct 3608 TAGTGTTTTCACAAAAATCTGCATCTTCAATCTC 3575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413621045660386