Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7169 232 6e-56 >seq7169 Length=15740 Score = 232 bits (256), Expect = 6e-56 Identities = 591/897 (66%), Gaps = 57/897 (6%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||| ||||||| ||||| ||||||||| || ||||| |||||||||| || |||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 12922 CATAAAATCGAAAGGATTTTTCGAAC---------------AATAGTAT----------- 12955 |||||| ||||| || || | |||| ||| ||| Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 12956 -------TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTG 13008 |||| | | || | ||| | ||||| || ||||| | ||||| ||||| || Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 13009 TTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtt 13068 |||||| | || ||||||||||| | | ||||| | |||||| | ||||| | Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 13069 tttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT 13128 | |||||| | || ||||| | | || || | | || ||| || ||||| || Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAA-CTCAATGCGCTCTTTA--GGAGGCTT 6358 Query 13129 --TGA-TAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACT 13185 | | || || ||||||| | ||| || || ||||| |||||||| |||||||| || Sbjct 6359 CTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCT 6418 Query 13186 TATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT 13245 ||| || || || |||| || ||||||||||| ||||| || || | |||||| || Sbjct 6419 TATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGAT 6478 Query 13246 AGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTC 13305 ||| ||||| ||| || ||||| | || || ||||||||||| || | | | ||| Sbjct 6479 AGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTC 6538 Query 13306 ACCATACGTACTATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAA 13364 || ||||| | || | || | ||||| | ||||| | || || | || Sbjct 6539 TGCAAACGTA-GACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAA 6597 Query 13365 CGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATAT 13424 | || | || || |||||| || || | ||| | | || || ||| ||||| Sbjct 6598 CACAATCCAGGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATAT 6657 Query 13425 AAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAAC 13484 | || || || |||||| |||||||| || || ||||| || || ||||| || | || Sbjct 6658 ATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCATAC 6717 Query 13485 CATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTT 13543 |||| ||||| | | || | | ||| ||||| || ||||| | |||| |||||| Sbjct 6718 CATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAA-CGTTCTAGTAAGTTC 6776 Query 13544 TCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttt 13603 || ||| || || ||||| ||||| || || || | | || ||||| | Sbjct 6777 TCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAA----ATG 6832 Query 13604 tCGTTTTCTGACAACTTTAA-------CCAATCTGGAAAATCTTTTGATAAATCTACCTC 13656 |||| || | ||||| | |||||| || || || ||||||||||| || Sbjct 6833 ACGTTCTC---CCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTC 6889 Query 13657 CTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATA 13713 || || ||||| || || || ||||| |||||||| | | ||| | ||| | ||| Sbjct 6890 TTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATA 6946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429992973367338