Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7169 183 7e-41 seq27942 159 8e-34 seq86813 89.7 1e-12 seq16717 87.8 4e-12 >seq7169 Length=15740 Score = 183 bits (202), Expect = 7e-41 Identities = 399/592 (67%), Gaps = 13/592 (2%) Strand=Plus/Minus Query 268701 GATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTG 268760 ||||||| | || |||||||| || ||| | ||| | | || || | || || | Sbjct 6969 GATTTGTACTTTTCCCAATACAATATCACGATGTTTGGCAGTTTTATAAGAAAGCTGTAG 6910 Query 268761 CTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATT 268820 | || || |||||||| |||||||||||| | || | |||||| | |||||| | Sbjct 6909 CATCGTTCTGGACTGTGGAAGAAGTAGATTTATCCAAGGACTTAGTTGATTGGGACTCCC 6850 Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATG 268880 | ||| | |||| | |||||||| || | | || || || || | ||||||| Sbjct 6849 TCAAAGTGGGAGAACGTCATTTTATATCATACGTGTTAGCATTCTTCGCTGCAAGTGATG 6790 Query 268881 GTATCGTTAACGAAAATCTAGTAGAGAAGTTCT-GTCAAGAGGTACAGATTCCTGAAGCC 268939 | |||||| || || || |||| | ||| | ||||||| || ||||| || |||| | Sbjct 6789 GAATCGTTCTTGAGAACTTACTAGA-ACGTTTTAGTCAAGAAGTGCAGATCCCCGAAGTC 6731 Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999 | ||||| || || | ||||||||||| || ||||| || || || |||||| || Sbjct 6730 CGTTGTTTCTATGGTATGCAGATAGCTATTGAGAATATACACTCCGAAATGTACTCCTTA 6671 Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACT--ATTTTC--TTCTAT 269055 ||||| || || ||||| || ||||| | ||| | ||||| | | || Sbjct 6670 TTAATCGACACATATATTAGGGA----CTCGAAAGAGAGAGATTTCCTTTTCAATGCAAT 6615 Query 269056 GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGA--- 269112 || | |||| ||||| || || || | ||||| ||| | ||||| || Sbjct 6614 AAGTAACCTGGATTGTGTTGCTAAGAAGGCTCAGTGGGCACTGGACTGGATCGGTGATTC 6555 Query 269113 TAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTC 269172 || | | | | |||| | |||| |||||||| || || || ||| | || || || Sbjct 6554 TAAGTCTACGTTTGCAGAACGTCTAGTCGCTTTTGCAGCAGTCGAGGGTGTGTTTTTCTC 6495 Query 269173 GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTT 269232 || |||||| |||||||||||| | ||||| |||| |||||||| || | | || Sbjct 6494 TGGTAGTTTTGCGGCTATCTTTTGGCTAAAGAAGCGAGGACTTATGCCGGGGCTGTCATT 6435 Query 269233 CTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 | ||| ||| | |||||||| || || || || || || |||||||||||| Sbjct 6434 CAGTAATGAACTCATAAGCAGAGATGAGGGATTGCATTGTGACTTCGCTTGT 6383 >seq27942 Length=6783 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||||||||| || |||||||||||||| || || || || |||| || || Sbjct 3797 AAGAACAAGATGTAATGTCGACTCTTTCTGAATATTGTAATCCGACAGTGTTCGTCCATC 3738 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || ||||| || || ||||| || | ||||||||| || ||||| ||||| || || Sbjct 3737 TTCAAGCTGTTTACCGGCGAAAATAAGACGCTGTTGATCTGGTGGTATGCCTTCCTTGTC 3678 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || || |||| ||| || |||||| || || || || || || Sbjct 3677 TTGAATCTTAGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAACTTCAAGGGTTATGGT 3618 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || |||||||| ||||| |||||||| || Sbjct 3617 TTTCCCCGTTAGTGTTTTCACAAAAATCTGCATCTT 3582 >seq86813 Length=1953 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || || || ||||||||||| || ||||| ||||| ||||| || | ||||| || || Sbjct 3 GGTGGGATACCTTCTTTATCTTGGATCTTGGCTTTCACATTCTCAATCGTATCACTCGGC 62 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || ||||| ||||| | |||||| || || |||||||| ||| Sbjct 63 TCGACTTCCAGAGTTATTGTCTTGCCAGTTAATGTTTTCACGAAGATCTGCATGTTG 119 >seq16717 Length=9856 Score = 87.8 bits (96), Expect = 4e-12 Identities = 197/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 238570 GAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCA 238629 |||| |||||| | || | | ||||| | || || |||| | ||| | || | Sbjct 4998 GAGCTGAAACTAAGGACGACTTGTGGAACGCAGCTCAACGACAACTCGTACGTACCGGGA 5057 Query 238630 AAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACT--AGAT- 238686 || | ||| |||| || |||||||||||||| || || || || |||||| | || | Sbjct 5058 AACTTCATGGTTTTTTGCGAATGTATTGGGCCAAGAAAATCCTGGAATGGCATGAAGGTG 5117 Query 238687 CTCCAAAGGAAGCTCTTAGATATAGTATT-TATCTGAACGATAAATACGAACTCGACGGT 238745 |||| | || || | || | | ||| || || |||||| | | || ||| || || Sbjct 5118 GTCCATCAGCTGCCCTAAAAT-TGGCATTATACCTTAACGATCATTTCGCACTAGATGGG 5176 Query 238746 ACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCA 238805 | ||||| || || | ||| ||| |||||||| |||||||| |||| ||| || Sbjct 5177 TCTGATCCCAATGGCTTCGTCGGTGTCATGTGGTCGATATGTGGTATACATGATCAGGGT 5236 Query 238806 TGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGA 238856 ||| | || |||||| | | || ||| | || | ||||| ||| ||||| Sbjct 5237 TGGGCAGAAAGACCTGTTTACGGGAAAATCAGGTGCATGACTTACAAAGGA 5287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148619525508252