Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09-
24] 188,369 sequences; 701,762,036 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq7169 170 2e-37
>seq7169
Length=15740
Score = 170 bits (188), Expect = 2e-37
Identities = 578/909 (64%), Gaps = 39/909 (4%)
Strand=Plus/Plus
Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246
||| || || | ||||| |||||| || ||||||||||||||||| | ||||||| |||
Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121
Query 21247 CATAAAATCAAATGGATTTTC--------------AGATTTAAATATTTTATTAC----- 21287
|||||| || ||||| || || |||| ||| ||| | | |||
Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181
Query 21288 --------------AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTG 21333
|||| ||||| ||| | || ||| || | || || || |||||
Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241
Query 21334 ACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGA 21393
|||||||||| |||||||| || |||| | ||||| ||||||| | ||||||
Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301
Query 21394 TTTTTCTATAGAGACGGCTTCAACAATTAT--ATTTATTATCCTAGATGTACTAGGGGGA 21451
| |||||| ||| ||||| || || | | | | || | || |||
Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAATGCGCTC--TTTAGGAGGCTTC 6359
Query 21452 TACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTT 21511
| || || |||||||||| | ||| || || ||||||||||| || ||||| || |||
Sbjct 6360 TTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCTT 6419
Query 21512 ATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATT 21571
|| | ||||||| |||| | || ||||| | ||||| ||| |||| |||||| ||
Sbjct 6420 ATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGATA 6479
Query 21572 GACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631
| |||||| || || || || | ||||| || || ||||| || |||| |||||
Sbjct 6480 GCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTCT 6539
Query 21632 CCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATA 21691
| | ||||| | ||| ||||| | |||||| | ||||| | || |
Sbjct 6540 GCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAACA 6599
Query 21692 CAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNN 21751
||||| | || || || || ||||| || | | || | || | ||
Sbjct 6600 CAATCCAGGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATATAT 6659
Query 21752 NNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCG 21811
|||||||| || |||||||| || || |||||||| | ||
Sbjct 6660 GTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCATACCA 6719
Query 21812 TAAAAACATCTTGCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTC 21870
|| ||||| | | || | || || || || ||||| |||| ||||| ||
Sbjct 6720 TAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAA-CGTTCTAGTAAGTTCTC 6778
Query 21871 ATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930
| || ||||||||||| || || || ||||| || | | | |||||||| |||||
Sbjct 6779 AAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGACGTTC 6838
Query 21931 GTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGT 21990
|| | | | |||||| | ||| || || ||||||||||||||||| ||
Sbjct 6839 TCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCACAGT 6898
Query 21991 CCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAA 22050
||| || || | ||| || ||||| | ||| | ||| | |||| |||||| ||
Sbjct 6899 CCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTGGGAA 6958
Query 22051 TATTACAAA 22059
| ||||||
Sbjct 6959 AAGTACAAA 6967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530648379727560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |