Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7169 170 2e-37 >seq7169 Length=15740 Score = 170 bits (188), Expect = 2e-37 Identities = 578/909 (64%), Gaps = 39/909 (4%) Strand=Plus/Plus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||| || || | ||||| |||||| || ||||||||||||||||| | ||||||| ||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 21247 CATAAAATCAAATGGATTTTC--------------AGATTTAAATATTTTATTAC----- 21287 |||||| || ||||| || || |||| ||| ||| | | ||| Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 21288 --------------AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTG 21333 |||| ||||| ||| | || ||| || | || || || ||||| Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 21334 ACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGA 21393 |||||||||| |||||||| || |||| | ||||| ||||||| | |||||| Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 21394 TTTTTCTATAGAGACGGCTTCAACAATTAT--ATTTATTATCCTAGATGTACTAGGGGGA 21451 | |||||| ||| ||||| || || | | | | || | || ||| Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAATGCGCTC--TTTAGGAGGCTTC 6359 Query 21452 TACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTT 21511 | || || |||||||||| | ||| || || ||||||||||| || ||||| || ||| Sbjct 6360 TTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCTT 6419 Query 21512 ATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATT 21571 || | ||||||| |||| | || ||||| | ||||| ||| |||| |||||| || Sbjct 6420 ATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGATA 6479 Query 21572 GACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631 | |||||| || || || || | ||||| || || ||||| || |||| ||||| Sbjct 6480 GCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTCT 6539 Query 21632 CCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATA 21691 | | ||||| | ||| ||||| | |||||| | ||||| | || | Sbjct 6540 GCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAACA 6599 Query 21692 CAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNN 21751 ||||| | || || || || ||||| || | | || | || | || Sbjct 6600 CAATCCAGGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATATAT 6659 Query 21752 NNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCG 21811 |||||||| || |||||||| || || |||||||| | || Sbjct 6660 GTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCATACCA 6719 Query 21812 TAAAAACATCTTGCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTC 21870 || ||||| | | || | || || || || ||||| |||| ||||| || Sbjct 6720 TAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAA-CGTTCTAGTAAGTTCTC 6778 Query 21871 ATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930 | || ||||||||||| || || || ||||| || | | | |||||||| ||||| Sbjct 6779 AAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGACGTTC 6838 Query 21931 GTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGT 21990 || | | | |||||| | ||| || || ||||||||||||||||| || Sbjct 6839 TCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCACAGT 6898 Query 21991 CCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAA 22050 ||| || || | ||| || ||||| | ||| | ||| | |||| |||||| || Sbjct 6899 CCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTGGGAA 6958 Query 22051 TATTACAAA 22059 | |||||| Sbjct 6959 AAGTACAAA 6967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530648379727560