Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq7169 210 3e-49 seq28879 114 2e-20 >seq7169 Length=15740 Score = 210 bits (232), Expect = 3e-49 Identities = 614/946 (65%), Gaps = 40/946 (4%) Strand=Plus/Plus Query 32993 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33052 || ||||||| ||||| ||||||||| || || |||||||| || ||||| || | Sbjct 6040 CTCGAGACATGACTCCAGCACGTTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCT 6099 Query 33053 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGG----------TAAC---- 33098 ||||||| | ||||||||||||||| || || || || ||| || | Sbjct 6100 TTCCTTCTATTGATATATTTTCCATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGA 6159 Query 33099 ----ATTATA-AAtt--------------tttttAAATCCCAATTCAGAAATCAATCTAT 33139 |||||| || | |||| | | || | |||| | || || || Sbjct 6160 TGTAATTATATAAGTACGACAGACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGAT 6219 Query 33140 CCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTG 33199 | |||| ||| || || ||| ||| | || |||||||||||||| || |||| | Sbjct 6220 CAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAG 6279 Query 33200 GAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAA 33259 | ||||| | | | ||| | ||||| || || || ||| | ||||| | || Sbjct 6280 GTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAA 6339 Query 33260 CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGT 33319 | |||| | || | || || |||||||||| | ||| ||||| || || | Sbjct 6340 TGCGCTCTTTAGGAGGCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAAT 6399 Query 33320 GCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCAC 33379 ||| ||||| ||||| || || ||||| || || | || || ||||| || || | Sbjct 6400 GCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTC 6459 Query 33380 GCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAG 33439 |||| || |||||||| || | || || ||||| || || | || || ||||| | Sbjct 6460 GCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTG 6519 Query 33440 CAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG----TCATGTATCCACTTTTGAGCC 33495 |||| || | || | ||| || ||| || ||| ||||| | | ||| Sbjct 6520 CAAAAGCGACTAGACGTTCTGCA-AACGTAGACTTAGAATCACCGATCCAGTCCAGTGCC 6578 Query 33496 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGttttt 33554 || | |||||||| |||||| || ||| || || ||||| || || | | | | Sbjct 6579 CACTGAGCCTTCTTAGCAACACAATCCAG-GTTACTTATTGCATTGAAAAGGAAATCTCT 6637 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 || || || ||| ||| || ||||| || | |||||||| || || || || Sbjct 6638 CTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATT 6697 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 ||||| || ||||| | || |||||||| | | |||| ||||| |||||| || Sbjct 6698 CTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACT 6757 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 ||| ||||| || || ||| || ||||| ||||| || || || || || || || Sbjct 6758 AAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACAC 6817 Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 33794 | | |||||||| ||| | | | || | ||||||| | || || || Sbjct 6818 GTATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGA 6877 Query 33795 TATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 || ||||||||||||||| ||||| || ||||| | || || ||||| | | ||| | Sbjct 6878 TAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAAC 6937 Query 33855 GTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 33900 || | |||||| |||||||||| ||||||| | ||||| ||| Sbjct 6938 ATCGTGATATTGTATTGGGAAAAGTACAAATCGGTGCGGATTGGGT 6983 >seq28879 Length=6601 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 |||||||| || || || ||||||| || | || ||| |||||| || ||||| || Sbjct 3418 AGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATCATAAATC 3359 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 ||||| || |||||||| |||| ||| || || || || || | ||| | Sbjct 3358 CCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGGTTTTGGT 3299 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | || |||||||| ||||||||||||||||| || | ||||||| Sbjct 3298 GTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACATTAGATTG 3239 Query 63672 TACGTCTCAAT 63682 || |||| ||| Sbjct 3238 TATGTCTAAAT 3228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621480400736040