Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq27942 89.7 5e-13 >seq27942 Length=6783 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||||| |||||||| || ||||| |||||||| | Sbjct 3811 CCACCACGAAGACGAAGAACAAGATGTAATGTCGACTCTTTCTGAATATTGTAATCCGAC 3752 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||| || || ||| | || | |||||| || || || || Sbjct 3751 AGTGTTCGTCCATCTTCAAGCTGTTTACCGGCGAAAATAAGACGCTGTTGATCTGGTGGT 3692 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC-TCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | |||| || | || || | | || | Sbjct 3691 ATGCCTTCCTTGTCTTGAATCTTAGCCTTCA-CTGCCTCTATGGTGTCAGCAGGTTCAAC 3633 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || ||||| ||||| || ||||||||||| Sbjct 3632 TTCAAGGGTTATGGTTTTCCCCGTTAGTGTTTTCACAAAAATCTGCAT 3585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470901392760960