Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11210 140 2e-28 seq18156 118 7e-22 seq11147 116 2e-21 seq5379 114 9e-21 seq5628 113 3e-20 seq23633 109 4e-19 seq123690 102 5e-17 seq652 98.7 7e-16 seq27942 95.1 8e-15 seq141650 87.8 1e-12 seq52344 86.0 4e-12 seq50375 86.0 4e-12 seq23089 82.4 5e-11 seq18258 82.4 5e-11 >seq11210 Length=12476 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 12270 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 12329 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 12330 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 12364 >seq18156 Length=9322 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| |||||| |||||||||| || |||||||| Sbjct 8541 AAGCCCGTTCCCTTGGCTGTGGTTTCACTAGATGGTAGATAGGGACAGTGGGAATCTCGT 8482 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | |||| |||| |||||||||||||||||| Sbjct 8481 TAATTCATTCACGCGCATCACTAATTAGATGACGA 8447 >seq11147 Length=12522 Score = 116 bits (128), Expect = 2e-21 Identities = 84/96 (88%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT-AGTAGATAGGGG-----GTAATCTCG 25955 ||||| ||||||||||||||||||| |||||| ||||||||||| | ||||||| Sbjct 1927 AAGCCTTTTCCCTTGGCTGTGGTTTCACTAGATTAGTAGATAGGGACAGTAGGAATCTCG 1868 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||||||||||||||||||| Sbjct 1867 TTAATCCATTCATGCGCGTCACTAATTAGATGACGA 1832 >seq5379 Length=17902 Score = 114 bits (126), Expect = 9e-21 Identities = 86/101 (85%), Gaps = 10/101 (10%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT-----AGTAGATAGGG-----GGTAA 25950 ||||||||||||||||| |||||||||||||||| ||||||||||| || || Sbjct 6700 TAAGCCCGTTCCCTTGGTTGTGGTTTCGCTAGATAGTAGAGTAGATAGGGACAGTGGGAA 6759 Query 25951 TCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||| ||||||||| |||| ||||||||||||| Sbjct 6760 TCTCGTTAATCCATTCATGCGCATCACCAATTAGATGACGA 6800 >seq5628 Length=17534 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||| |||||||||||||||||||||||||||||||||| | ||||||| Sbjct 7692 AAGCTCGTTTCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAATGAGGATCTCGT 7751 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||| |||||||||||| Sbjct 7752 TTATCCGTTCATGCGCGTCACTGATTAGATGACGA 7786 >seq23633 Length=7724 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| |||||||||| ||||||||||||||||||||| || |||| || Sbjct 1938 AAGCCCGTTCTTTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGGATCTTGT 1879 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| ||||||||||||||||||| Sbjct 1878 TAATCCATTCATGCTTGTCACTAATTAGATGACGA 1844 >seq123690 Length=1118 Score = 102 bits (112), Expect = 5e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || Sbjct 238 TTACTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGACT 297 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | | ||||||||||| Sbjct 298 CGTGCAAGTATTTAGCCTT 316 >seq652 Length=36095 Score = 98.7 bits (108), Expect = 7e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| ||||||||||||||||||||||||||||| |||| || || Sbjct 16519 TTACTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTTACTATTGGACT 16578 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | | ||||||||||| Sbjct 16579 CGTGCAAGTATTTAGCCTT 16597 >seq27942 Length=6783 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| || |||||||||||||| |||| ||| | || || | ||||| ||||| || Sbjct 3776 CTCTTTCTGAATATTGTAATCCGACAGTGTTCGTCCATCTTCAAGCTGTTTACCGGCGAA 3717 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || |||||||| | || | |||||| ||||| ||| || |||||| Sbjct 3716 AATAAGACGCTGTTGATCTGGTGGTATGCCTTCCTTGTCTTGAATCTTAGCCTTCACTGC 3657 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 || | || || || ||||||||| | || || ||||| ||||| | |||||||| Sbjct 3656 CTCTATGGTGTCAGCAGGTTCAACTTCAAGGGTTATGGTTTTCCCCGTTAGTGTTTTCAC 3597 Query 38306 GAATATCTGCATGTT 38320 || |||||||| || Sbjct 3596 AAAAATCTGCATCTT 3582 >seq141650 Length=870 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| |||| |||||||||||||||||||||||| ||||| || Sbjct 534 TTACTCTCTCTTCAAAGTACTTTCCAACTTTCCCTCACGGTACTTGTTTAATATCGAACT 475 Query 20004 CGCGGTAATATTTAGCCT 20021 || | | |||||||||| Sbjct 474 CGTGCAAGTATTTAGCCT 457 >seq52344 Length=3735 Score = 86.0 bits (94), Expect = 4e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAG-ATAGTAGATAGGGG-----GTAATCTCGTTAATCC 25962 ||||||||||||| |||||||||| |||||||||| | | ||||| |||||||| Sbjct 640 TTCCCTTGGCTGTAGTTTCGCTAGGATAGTAGATAAGAACAGTAGGAATCTAGTTAATCC 699 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||||||||||||||||||||| || Sbjct 700 ATCTATGCGCGTCACTAATTAGATGATGA 728 >seq50375 Length=3900 Score = 86.0 bits (94), Expect = 4e-12 Identities = 73/90 (81%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| | |||||||| |||||||||||| ||||| || |||||| || |||||||| Sbjct 1532 AAGCTCTTTCCCTTGTCTGTGGTTTCGCCAGATAATATATAGGGGCAGTGGGAATCTCGT 1591 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 |||| | |||||| || |||| |||||||| Sbjct 1592 TAATGCATTCATGTGCATCACCAATTAGAT 1621 >seq23089 Length=7881 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/93 (80%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| ||||||||||||| |||| ||||||| || || | ||||| | Sbjct 628 AAGCCCGTTCTCTTGGCTGTGGTTCCGCTTGATAGTAAGTATGGACAGTAGGAATCTGAT 687 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||| ||||||||||||| |||||| Sbjct 688 TGATCCATTCATACGCGTCACTAATTGGATGAC 720 >seq18258 Length=9289 Score = 82.4 bits (90), Expect = 5e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||| | |||||||||||||||||| |||||||||| ||||||| |||| Sbjct 3045 TCTCTCTCTTCAAAATACTTTTCAACTTTCCCTCATGGTACTTGTTTACTATCGGACTCG 3104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334178245907639