Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7169 206 3e-48 seq28879 123 3e-23 seq5179 87.8 2e-12 >seq7169 Length=15740 Score = 206 bits (228), Expect = 3e-48 Identities = 605/932 (65%), Gaps = 40/932 (4%) Strand=Plus/Plus Query 32350 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 32409 || ||||||| ||||| ||||||||| || || |||||||| || ||||| || | Sbjct 6040 CTCGAGACATGACTCCAGCACGTTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCT 6099 Query 32410 TACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGG----------TAAC---- 32455 | ||||||| ||||||||||||||| || |||||||| ||| || | Sbjct 6100 TTCCTTCTATTGATATATTTTCCATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGA 6159 Query 32456 ----ATTATA-AAtt--------------tttttAAATCCCAATTCAGAAATCAATCTAT 32496 |||||| || | |||| | | || | |||| | || || || Sbjct 6160 TGTAATTATATAAGTACGACAGACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGAT 6219 Query 32497 CTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTG 32556 | |||| || || || ||| ||| | || |||||||||||||| || |||| | Sbjct 6220 CAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAG 6279 Query 32557 GAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTA 32616 | ||||| | | | ||| | ||||| || ||| || ||| | ||||| | || | Sbjct 6280 GTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAATCAA-CTCA 6338 Query 32617 CTGTT-TCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 32675 || |||| | || | || || |||||||||| | ||| ||||| || || Sbjct 6339 ATGCGCTCTTTAGGAGGCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAA 6398 Query 32676 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 32735 || | ||||| ||||| || || | ||| || || | || || ||||| || || Sbjct 6399 TGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCT 6458 Query 32736 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 32795 ||||| || |||||||| || | |||||| ||||| || || | || || ||||| Sbjct 6459 CGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCT 6518 Query 32796 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG----TCATGTATCCACTTTTGAGC 32851 ||||| || | || | ||| || ||| || ||| ||||| | | || Sbjct 6519 GCAAAAGCGACTAGACGTTCTGCA-AACGTAGACTTAGAATCACCGATCCAGTCCAGTGC 6577 Query 32852 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 32911 ||| | |||||||| |||||| || | ||| ||||| || || | | | | Sbjct 6578 CCACTGAGCCTTCTTAGCAACACAATCCAGGTTACTTATTGCATTGAAAAGGAAATCTCT 6637 Query 32912 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971 || || || ||| |||||| || || || | |||||||| || || || || Sbjct 6638 CTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATT 6697 Query 32972 TTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACA 33031 ||||| || || || | || ||||| || | | |||| ||||| |||||| || Sbjct 6698 CTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACT 6757 Query 33032 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33091 ||| |||||| ||| || ||| || ||||| ||||| || || || || || || || Sbjct 6758 AAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACAC 6817 Query 33092 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 33151 | | |||||||| ||| | | | || | ||||||| | || || || Sbjct 6818 GTATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGA 6877 Query 33152 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 || ||| ||||||||||| ||||| || ||||| | || || ||||| | | ||| | Sbjct 6878 TAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAAC 6937 Query 33212 GTCATGATATTGAATTGGAAAAATAACAAATC 33243 || |||||||| ||||| |||| ||||||| Sbjct 6938 ATCGTGATATTGTATTGGGAAAAGTACAAATC 6969 >seq28879 Length=6601 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 |||||||| || || || ||||||| || | || ||| |||||| |||||||| || Sbjct 3418 AGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATCATAAATC 3359 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 ||||| |||||||||||| |||| ||| || || || || || | ||| | Sbjct 3358 CCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGGTTTTGGT 3299 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || |||||||| || |||||||||||||| || | ||||||| Sbjct 3298 GTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACATTAGATTG 3239 Query 63527 TACGTCTCAAT 63537 || |||| ||| Sbjct 3238 TATGTCTAAAT 3228 >seq5179 Length=18205 Score = 87.8 bits (96), Expect = 2e-12 Identities = 252/382 (66%), Gaps = 7/382 (2%) Strand=Plus/Minus Query 61925 TAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 61984 ||||||||||| || |||| ||| |||| | || | || | ||| | || | |||| Sbjct 936 TAAAAATGCATGCTAGTTATTTTCCCATAATTAGGTTGAGCAAGATGCAAGTTAAGAGAT 877 Query 61985 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGA 62044 |||||||| || ||||| | | | | ||| || ||||| | ||||| |||| || | Sbjct 876 TGACTTTGGTCAATGAAAGGTGCACGGTCAGCTGCCATATCAATAATTTTCTTCTGAGAG 817 Query 62045 ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGA 62101 |||||||||| ||| ||||| | |||| | ||||| || | | ||| |||| Sbjct 816 ATTTCCCAAACAGTCTTATACAAAGGCTTCAACTCTTCAGGGATTCCATCGATATGCTGA 757 Query 62102 ATGGATCCACCA-TCTGCCATA-ATCCTATTCTTGATCTCATCATTCCATAATTTTCTCT 62159 || || || | || || ||| | | ||| || || ||| ||| || | | || Sbjct 756 ATTGAACCTTGATTCAGCAATATAGCTGATTTAAGA-CT-ATCTGACCACAAATCTAACT 699 Query 62160 CGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCC 62219 || | | | ||| |||| ||||| || | || ||||| || || || | | Sbjct 698 TTGTAAGATCCTCAAGAAGATATGGATTCACAATCTGGAATTCACCGCTTAAAACACGAC 639 Query 62220 GAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAG 62279 ||| | | || || || | ||||| || ||||| ||||| | || |||| | Sbjct 638 GAGAAAAGACGTTGCTTGTGAATGGTTCAGTGGATTCATTGTTTCCAAGGATCTGAGAGG 579 Query 62280 TTGATGCAGTCGGCATAGGTGC 62301 ||||||||||||||||||| || Sbjct 578 TTGATGCAGTCGGCATAGGCGC 557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632140042172400