Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7169 259 5e-64 >seq7169 Length=15740 Score = 259 bits (286), Expect = 5e-64 Identities = 544/798 (68%), Gaps = 20/798 (3%) Strand=Plus/Plus Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982 || |||||| | || || ||||| || |||| || | ||||||||||||| || | Sbjct 6215 TCGATCAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCT 6274 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTT- 93041 ||||||||||| || | ||| || | | || || || || |||||||||| || Sbjct 6275 AACAGGTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAATCAA 6334 Query 93042 CT-ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100 || | | | || || || || || || | || | | || ||| | || || ||| Sbjct 6335 CTCAATGCGCT-CT-TTAGGAGGCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAG 6392 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 || ||| || || || |||| ||| | ||||| ||||||| | || || | Sbjct 6393 TCACAATGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATA 6452 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 |||||||| ||||| |||||||| || | |||||||||||||| ||||| | ||| || Sbjct 6453 AGTCCTCGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCG 6512 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG---GAATTACTGCTGATCCAT 93277 || |||||||| || || | |||||| ||||| | | |||| || | ||||| Sbjct 6513 ACTGCTGCAAAAGCGACTAGACGTTCTGCAAACGTAGACTTAGAATCACCG---ATCCAG 6569 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG-ATAGCGTTAAATAG 93336 | | ||||| | || || || || |||| || ||| | || || || || || Sbjct 6570 TCCAGTGCCCACTGAGCCTTCTTAGCAACACAATCCAG-GTTACTTATTGCATTGAAAAG 6628 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | |||||| ||| | ||| || | || ||||| |||||||| | || |||||||| || Sbjct 6629 GAAATCTCTCTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGA 6688 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 || | |||||| || || || || | || |||||||| | |||| | ||||||||| Sbjct 6689 GTGTATATTCTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCTGCAC 6748 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 ||||||| ||| | |||| | || ||| || || ||||| ||| || || || Sbjct 6749 TTCTTGACTAAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAA 6808 Query 93517 aGCCAATA--TATGCTTTATAAAATG--TTTCTCATCATCTTTAAGCTTATCCCAATCGG 93572 || || | |||| ||||||||| ||||| | |||| || |||||||| Sbjct 6809 TGCTAACACGTATG--ATATAAAATGACGTTCTC--CCACTTTGAGGGAGTCCCAATCAA 6864 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 || || || || | ||| |||||||| |||||||| ||||||||| | ||||| || | Sbjct 6865 CTAAGTCCTTGGATAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTAT 6924 Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTT 93692 | | | ||| | || |||||||| ||||| || | ||||| || | || || || Sbjct 6925 AAAACTGCCAAACATCGTGATATTGTATTGGGAAAAGTACAAATCGGTGCGGATTGGGTT 6984 Query 93693 TTAGTAACGGCTCTAGTT 93710 | || | ||||||| || Sbjct 6985 TGAGCAGGGGCTCTACTT 7002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555549608599560