Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq152287 89.7 1e-12 seq38750 89.7 1e-12 seq30162 84.2 4e-11 >seq152287 Length=771 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||| Sbjct 103 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCTAGC 44 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 43 CCCACGTCGGGC 32 >seq38750 Length=5090 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | |||||||||| ||||||| ||||||||||||| |||||||||||||||| Sbjct 2775 GCCCCGCTAGCTCAGTCAGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2834 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 2835 CCCACATCGGGC 2846 >seq30162 Length=6369 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||||| ||||||||||||| ||||||| ||||||||| ||| ||||||||||||||| Sbjct 3022 GTCTCCGTGGCGCAATGGATAGCGCGTCGGACTTCTATTCCGGAGGTTGCGGGTTCGAGT 3081 Query 142113 CCCGCC 142118 |||||| Sbjct 3082 CCCGCC 3087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025356138688329