Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq42632 86.0 5e-12 seq16717 82.4 6e-11 seq16663 82.4 6e-11 >seq42632 Length=4636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/106 (81%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 115532 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACCA 115589 ||||||| ||||||||||||| || |||||||| ||| | || |||||||||||||| Sbjct 826 ATGTATTAGCTCTAGAATTACTACAGTTATCCAGGTAGTATA-TATGATCTAAGGAACCA 768 Query 115590 AAACTGATATATTGAGCCATTCGTGGTATC---GTCTTAA-GTATG 115631 | ||||| || ||||||||||||||| || || |||| ||||| Sbjct 767 TAGCTGATTTAATGAGCCATTCGTGGTCTCACAGTTTTAAGGTATG 722 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/106 (81%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 114335 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACCA 114392 ||||||| ||||||||||||| || |||||||| ||| | || |||||||||||||| Sbjct 826 ATGTATTAGCTCTAGAATTACTACAGTTATCCAGGTAGTATA-TATGATCTAAGGAACCA 768 Query 114393 AAACTGATATATTGAGCCATTCGTGGTATC---GTCTTAA-GTATG 114434 | ||||| || ||||||||||||||| || || |||| ||||| Sbjct 767 TAGCTGATTTAATGAGCCATTCGTGGTCTCACAGTTTTAAGGTATG 722 >seq16717 Length=9856 Score = 82.4 bits (90), Expect = 6e-11 Identities = 202/301 (67%), Gaps = 9/301 (3%) Strand=Plus/Plus Query 37838 CTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCG 37897 |||||||||||| |||||| || || || || || || | ||| | | |||| Sbjct 5017 CTTGTGGAACGCAGCTCAACGACAACTCGTACGTACCGGGAAACTTCATGGTTTTTTGCG 5076 Query 37898 CATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATG----CTCAGACCGCGCTCA 37953 ||||||||| ||||||||| |||||||| ||| | || |||| | || || | Sbjct 5077 AATGTATTGGGCCAAGAAAATCCTGGAATGGCATGAAGGTGGTCCATCAG-CTGCCCTAA 5135 Query 37954 ACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACG 38013 | | || | || || || ||| | | | | || ||| ||||||||| || | || Sbjct 5136 AATTGGCATTATACCTTAACGATCATTTCGCACTAGATGGGTCTGATCCCAATGGCTTCG 5195 Query 38014 TCGGCTGT-TTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATT 38072 |||| ||| ||||||| ||||| || |||| ||| | ||| || | || || Sbjct 5196 TCGG-TGTCATGTGGTCGATATGTGGTATACATGATCAGGGTTGGGCAGAAAGACCTGTT 5254 Query 38073 TACGGCAAGATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTTTAATGTTAACCAT 38132 ||||| || || ||| ||||| ||||| |||||| |||| ||| ||| ||||| Sbjct 5255 TACGGGAAAATCAGGTGCATGACTTACAAAGGATGTCAAGGGAAATTTTCTGT--ACCAT 5312 Query 38133 T 38133 | Sbjct 5313 T 5313 >seq16663 Length=9873 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/107 (80%), Gaps = 7/107 (7%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||| || |||||||| ||| | || ||||||||||||| Sbjct 486 CATGTATTAGCTCTAGAATTATTACAGTTATCCATGTAGTATA-TATGATCTAAGGAACC 428 Query 115589 AAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAAG-TATG 115631 | | ||||| || ||||||||||||||| | ||| ||||| |||| Sbjct 427 ATAGCTGATTTAATGAGCCATTCGTGGTTTCACCGTTTTAAGCTATG 381 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/107 (80%), Gaps = 7/107 (7%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||| || |||||||| ||| | || ||||||||||||| Sbjct 486 CATGTATTAGCTCTAGAATTATTACAGTTATCCATGTAGTATA-TATGATCTAAGGAACC 428 Query 114392 AAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAAG-TATG 114434 | | ||||| || ||||||||||||||| | ||| ||||| |||| Sbjct 427 ATAGCTGATTTAATGAGCCATTCGTGGTTTCACCGTTTTAAGCTATG 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396150845111938