Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq27942 96.9 4e-15 seq3061 86.0 7e-12 >seq27942 Length=6783 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||| ||||| ||| || |||||||||||||| | ||| || || | || || ||||| Sbjct 3788 ATGTAATGTCGACTCTTTCTGAATATTGTAATCCGACAGTGTTCGTCCATCTTCAAGCTG 3729 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||| ||||| || || ||||| || || | ||| | || ||||||| | ||| | | Sbjct 3728 TTTACCGGCGAAAATAAGACGCTGTTGATCTGGTGGTATGCCTTCCTTGT-CTTGAATCT 3670 Query 42125 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | || | | | | | ||||| | ||| || || | || |||||||| |||| Sbjct 3669 TAGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAACTTCAAGGGTTATGGTTTTCCCCG 3610 Query 42184 TTAGCGTCTTTACAAAGATTTGCATTTTCA 42213 |||| || || ||||| || ||||| |||| Sbjct 3609 TTAGTGTTTTCACAAAAATCTGCATCTTCA 3580 >seq3061 Length=22250 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||| || | |||||||||| || | || ||||||||||||| ||||||||||||| Sbjct 21216 CTCCTCGACAGGGAATCGAACCCGGGCATTCCACGTGACAGGCGGAGATACTCACCACTA 21275 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 21276 TACTATCGAGGA 21287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541933744350960