Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq27942 113 4e-20 >seq27942 Length=6783 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCG--CG 64288 ||| || ||||| | ||||| ||||| ||||| |||||||| |||| ||| || | Sbjct 3797 AAGAACAAGATGTAATGTCGACTCTTTCTGAATATTGTAATC--CGACAGTGTTCGTCCA 3740 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||||||||| || ||||| |||| || ||||| || || || || || ||||| || Sbjct 3739 TCTTCAAGCTGTTTACCGGCGAAAATAAGACGCTGTTGATCTGGTGGTATGCCTTCCTTG 3680 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| || |||| | || ||| | | || ||||| | |||| | Sbjct 3679 TCTTGAATCTTAGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAACTTCAAGGGTTATG 3620 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || || || | ||||| || ||||| ||||| || Sbjct 3619 GTTTTCCCCGTTAGTGTTTTCACAAAAATCTGCATCTT 3582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498468330108360