Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq14914 237 6e-57 seq27942 138 4e-27 >seq14914 Length=10545 Score = 237 bits (262), Expect = 6e-57 Identities = 906/1400 (65%), Gaps = 38/1400 (3%) Strand=Plus/Minus Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 |||||||||| | ||||| || | | ||||| | | | |||||| | | |||| Sbjct 7095 AAAACACAGTTTTTGATGTCAAGAGACTCATTGGAAGAACTTTTGATGAGCAGTCAGTAC 7036 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGA-AAGCCCTATATT 451207 || | || | || || ||| | || || || ||||||| | || |||||| || Sbjct 7035 AAGACGATATTAAGCACTACCCTTTCAAAGTTGTCAA-CAAAAAGAACAAACCCTATGTT 6977 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 |||| || | | ||| || || | |||||||| ||||| || || ||||||| Sbjct 6976 GAAGTGAAAGTTGGTGCTGATACAAAGTCGTTTGCTCCAGAAGAGATATCTGCTATGGT- 6918 Query 451268 CTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 |||| ||| |||||||||| || ||| |||| | ||| || || |||| || Sbjct 6917 CTTAGGAAAGATGAAAGAAAGTGCTGAAGCATATTTGGGTAAAAAGGTGACACATGCCGT 6858 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | ||||||| || || || |||| |||||| ||||| || ||||| |||||||| || Sbjct 6857 AGTTACTGTGCCAGCCTACTTCAGTGATGCTCAACGTCAGGCAACAAAAGATGCTGGTAC 6798 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||| || || ||||| ||||| |||||||| ||||| || |||||||| | || || Sbjct 6797 CATTGCAGGGTTGAATGTACTTCGTATTATTAACGAACCAACTGCAGCTGCGATTGCCTA 6738 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 || || ||| || ||||||| | || || ||||| | || |||||| |||| || Sbjct 6737 CGGTCT-GGACAA--AAAAGAA---GGTGAGAAGAATATCCTCGTTTTTGATCTTGGGGG 6684 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || || ||| |||| | || | ||||| |||| || |||||||| || || Sbjct 6683 TGGTACGTTCGATGTTTCTTTGCTCACTATTGAGAATGGAGTGTTTGAAGTGGTTGCCAC 6624 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA---TGCAATTGTGGAATGGTT 451623 ||||||||||| ||||| || || |||||| |||| | || |||| | | | Sbjct 6623 GAATGGTGATACACATCTGGGTGGGGAAGATTTTGACCAACGTGTTATTGATCATT--TC 6566 Query 451624 G-AAAACTGATGTTCA--ACGAAAACTAAAAGTAGATATTTCTACTAACCAAAAAGCACT 451680 | ||| |||| | | | |||| ||| ||||||| || || ||| | || Sbjct 6565 GCAAAGTTGATTCTTAAGAAGAAAGGTAA----AGATATTAAAACAGAC--AAACGTGCT 6512 Query 451681 -TAGACGTCTTAAAACATCA-GCAGAAAAAGCTAAAATTACACTCAGTTCAACACAAACT 451738 || | || | || | | | || || || || | || | || ||| |||||| Sbjct 6511 GTACAGAAGTTGAGACGTGAGGTTGAGAAGGCGAAGAGGACCTTGAGCACAATGCAAACT 6452 Query 451739 ACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGT 451798 | | | ||||| | | ||||||| ||||| | || |||||||| || Sbjct 6451 GTGCGAGTTGAGATTGAATCTCTGATTGATGGTGAGGATTTTTCTGAAACTCTTACACGA 6392 Query 451799 GCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGGGTA--ATGAAACCTGTTGATC 451856 || ||||||| || || | |||| | |||| | | || | |||||| | Sbjct 6391 GCCGTATTTGAA--AAGTTAAATATGGATTTATTCACGAGGACTTTGGAGCCTGTTAAGA 6334 Query 451857 AAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAGGAG 451916 | || | | ||| | | || | ||||| | ||||| || ||||| | || || | Sbjct 6333 AGGTCCTGGAAGATGCCAGTATGAAGAAAGAAGAGATTGACGAGATTGTCTTAGTTGGTG 6274 Query 451917 GTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTTGGAGGAAAACAAC 451976 | || || ||||| || ||| | ||| | | || || |||| || ||| ||| Sbjct 6273 GATCCACTCGAATCCCGAAAGTCCAACAACTACTGCAGGATTTCTTTGACGGCAAAGAAC 6214 Query 451977 TATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTA 452036 | | | || |||||||| ||||| || || |||||||| || || || | | | Sbjct 6213 CAAACAGAGGAGTTAATCCTGACGAAGCAGTCGCTTATGGTGCAGCTGTACAGGGTGGTG 6154 Query 452037 TTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTC 452096 || | |||| | || ||||| |||| | || |||| | ||||| || Sbjct 6153 TT---ATAGGT---GGTGTAGAAAATACTGGAGGTGTTGTGTTGCTGGATGTTTGTCCCT 6100 Query 452097 TATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTT 452156 | | || || ||||||||| |||||| | ||||| || | || | || || Sbjct 6099 TGACACTGGGTATTGAAACAGTTGGTGGTGTAATGACAAAACTCATCCCAAGAAATACAG 6040 Query 452157 CTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAA 452216 |||||| || ||| |||| |||| |||||| ||||||||||| ||||| Sbjct 6039 TTATTCCAACAAAGAAGTCGCAAATATTTTCTACAGCTGCCGATAACCAACCTACTGTAA 5980 Query 452217 CTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT-AATAATAAACTAGGAGAA 452275 | |||||||| || || || ||||| ||||||||| || | || || ||| || || Sbjct 5979 CCATTCAAGTATTCGAGGGTGAACGAGCAATGACA-AAGTTCAACCATTTACTTGGTAAA 5921 Query 452276 TTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTAT 452335 ||| | | | |||||||| ||| | || ||| ||||||||| |||||| Sbjct 5920 TTTGATTTGACTGGTATTCCTCCAGCACCACGTGGTGTTCCACAAATTGAAGTTACCTTC 5861 Query 452336 GATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCA 452395 || | |||| ||| || || | | || | || | || ||| | | || ||| || Sbjct 5860 GAAATCGATGTAAACGGAATATTGAGAGTAAAAGCGGAAGATAAAGGAACAGGTAAAGCA 5801 Query 452396 GAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATG 452455 | |||||| || | ||| || |||||||| | | ||||| || ||||| ||| Sbjct 5800 AACAAAATTGAGATCAATAAGGAACAAAACCGTCTCAATCCTGAAGAAATCGAAAAGATG 5741 Query 452456 GTAGATGAAGCAGAAAAATT 452475 | |||| |||||| |||| Sbjct 5740 ATCAATGAGGCAGAACAATT 5721 >seq27942 Length=6783 Score = 138 bits (152), Expect = 4e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||||| || || ||||| || || ||||| |||||| | || Sbjct 3585 ATGCAGATTTTTGTGAAAACACTAACGGGGAAAACCATAACCCTTGAAGTTGAACCTGCT 3644 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || || | || || |||||||| |||||||| || || || |||||| Sbjct 3645 GACACCATAGAGGCAGTGAAGGCTAAGATTCAAGACAAGGAAGGCATACCACCAGATCAA 3704 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || ||||| |||||||||||| |||| || ||||||| ||| Sbjct 3705 CAGCGTCTTATTTTCGCCGGTAAACAGCTTGAAGATGGACGAACACTGTCGGATTACAAT 3764 Query 391230 ATTGATAAGGA 391240 ||| | || || Sbjct 3765 ATTCAGAAAGA 3775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1970950047477852