Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq14914 163 2e-34 seq52544 107 1e-17 seq25209 98.7 7e-15 >seq14914 Length=10545 Score = 163 bits (180), Expect = 2e-34 Identities = 430/655 (66%), Gaps = 6/655 (1%) Strand=Plus/Plus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||||||||| || |||| | |||| || ||| || |||| || | |||| Sbjct 6588 TCAAAATCTTCCCCACCCAGATGTGTATCACCATTCGTGGCAACCACTTCAAACACTCCA 6647 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | |||| || | | || ||||| || ||||| || | |||||||| || | | Sbjct 6648 TTCTCAATAGTGAGCAAAGAAACATCGAACGTACCACCCCCAAGATCAAAAACGAGGATA 6707 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||| | || |||| |||| || ||||| || |||| ||||| ||||||||||| Sbjct 6708 TTCTTCTCACCTTCTT---TTTTGTCCAGACCGTAGGCAATCGCAGCTGCAGTTGGTTCG 6764 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 |||||||| | | ||||| | || ||||| | || |||||||| || || || | | Sbjct 6765 TTAATAATACGAAGTACATTCAACCCTGCAATGGTACCAGCATCTTTTGTTGCCTGACGT 6824 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || | ||| | || || || || ||||||| ||||||| || || | |||||| | | Sbjct 6825 TGAGCATCACTGAAGTAGGCTGGCACAGTAACTACGGCATGTGTCACCTTTTTACCCAAA 6884 Query 518327 TAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAA 518386 || || || ||| |||||| || | ||| | ||| | || || | |||||| | | Sbjct 6885 TATGCTTCAGCACTTTCTTTCATCTTTCCTAAGACCATAGCAGATATCTCTTCTGGAGCA 6944 Query 518387 TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 518446 | ||| | ||| | | ||||||| ||| ||||| || || | | Sbjct 6945 AACGACTTTGTATCAGCACCAACTTTCACTTCAACATAGGGTTTGTTCTTTTTGTTGACA 7004 Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 ||||| || || ||| || ||||| ||| || || |||| |||| ||| ||| Sbjct 7005 ACTTTGAAAGGGTAGTGCTTAATATCGTCTTGTACTGACTGCTCATCAAAAGTTCTTCCA 7064 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || | || || ||||||||| || || || || | | ||| | |||||| Sbjct 7065 ATGAGTCTCTTGACATCAAAAACTGTGTTTTCAGGGTTGGAGGTAAGTTGGTGTTTGGCA 7124 Query 518567 GCATCTCCAATCAGATGTTCTGTCTCTGTA---AATGAAACATATGATGGAGTTGTGCGA 518623 ||||||||||| || |||| || ||| |||| ||||| || || || | | | Sbjct 7125 GCATCTCCAATAAGCCGTTCACCTTCCGTAGTGAATGCCACATAAGAAGGCGTAATCCTA 7184 Query 518624 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 || || ||||| || || || ||||| ||| | ||| || |||| || |||| Sbjct 7185 TTTCCCTGATCGTTGGCGATTATTTCCACTCTTCCACCCTGAAATACCCCAACAC 7239 >seq52544 Length=3719 Score = 107 bits (118), Expect = 1e-17 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 635396 AAATTATATAATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTG 635455 ||||| || ||||| | || || || || ||| | || ||||||| || || || Sbjct 270 AAATTGGATGATGCTAATAACGCGGGTACTAAAAACTCATCCCAATGTACGCTTATCTTA 211 Query 635456 ACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGAT 635515 || || || || ||||||||||| || ||| | |||||||| ||| |||| |||||| Sbjct 210 ACTGAAGGTGACTCAGCTAAAACGTTGGCTGTAGCTGGTCTTGGAGTTGTTGGTAGAGAT 151 Query 635516 TATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaa 635575 ||||||| || || ||||| |||| ||||| |||||||| | || || |||| Sbjct 150 AATTATGGCGTCTTTCCACTACGAGGTAAACTATTGAATGTGCGTGAGGCATCAAGTAAA 91 Query 635576 aaaaTTGCTGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGG 635622 |||| | || |||| ||||| | ||| | | |||||| |||| Sbjct 90 CAAATAGTGGAGAATGCAGAAATCAATGCATTGATTAAAATTCTTGG 44 >seq25209 Length=7363 Score = 98.7 bits (108), Expect = 7e-15 Identities = 141/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 668822 AAAGTCACTAAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAAT 668881 ||||||| | || ||| |||| |||| | |||| ||||||||| | || ||| Sbjct 4539 AAAGTCAATCAAACAACGTCTTAAAG--------GCAAAGCTGGTCGTATTCGTGGCAAT 4488 Query 668882 TTGATGGGAAAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATT 668941 | ||||| |||||||| || | ||||| ||||| || ||||| ||||||| ||| || Sbjct 4487 CTTATGGGTAAACGTGTTGACTTCTCTGCTCGTACTGTCATTACAGCTGATCCAAATCTT 4428 Query 668942 GCTCTCAATGAAGTTGGTGTTCCTCTTATTATTGCTAAAAATCTTACTTTTGACGAAATT 669001 | || ||||||||||||| | ||| ||| ||||||| |||| | ||||| Sbjct 4427 AACTTAGATCAAGTTGGTGTTCCAAGAACTATAGCTCAAAATCTAACTTATCCTGAAATG 4368 Query 669002 GTAACAGAACATAATATTGA 669021 || ||| || ||| || || Sbjct 4367 GTTACACAATTTAACATAGA 4348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3771474909732514