Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq14914 224 1e-53 seq28879 102 1e-16 seq7169 87.8 2e-12 >seq14914 Length=10545 Score = 224 bits (248), Expect = 1e-53 Identities = 439/638 (69%), Gaps = 18/638 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || |||||||| ||||||| |||||||| || || || |||||||| | || Sbjct 6588 TCAAAATCTTCCCCACCCAGATGTGTATCACCATTCGTGGCAACCACTTCAAACACTCCA 6647 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | ||| |||||||| ||||||||||| || || ||||||| ||| | Sbjct 6648 TTCTCAATAGTGAGCAAAGAAACATCGAACGTACCACCCCCAAGATCAAAAACGAGGATA 6707 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | ||||| || | | |||||||| || || || || || |||||||| Sbjct 6708 TTCTTCTCACCTTCTTTTTTGT---CCAGACCGTAGGCAATCGCAGCTGCAGTTGGTTCG 6764 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 |||||||||||||| ||| |||| || ||||| || | |||||||| || || || || Sbjct 6765 TTAATAATACGAAGTACA-TTCAACCCTGCAATGGTACCAGCATCTTTTGTTGCCTGACG 6823 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| | ||| | |||||||| || || || || || || | || || || ||||| | Sbjct 6824 TTGAGCATCACTGAAGTAGGCTGGCACAGTAACTACGGCATGTGTCACCTTTTTACCCAA 6883 Query 7756 ATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 ||| | ||| || | |||||||| ||| |||| ||||| | || |||||||| | | Sbjct 6884 ATATGCTTCAGCACTTTCTTTCATCTTTCCTAAG-ACCATAGCAGATATCTCTTCTGGAG 6942 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCAT-GGGTTTATCCGCAGCACCG 7873 ||||| || || ||| | || | ||||||| ||| |||||| | | | Sbjct 6943 CAAACGACTTTGTATCAGCACCAACTTTCACTTCAA-CATAGGGTTTGTTC---TTTTTG 6998 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 || ||| || | | | | || ||||||||||| || || || ||| || Sbjct 6999 TTGACAACTTTGAAAGGGTAGTGCTTAATATCGTCTTGTACTGACTGCTCATCAAAAGTT 7058 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 ||||| || || | ||| |||||||||||||||||| ||||| || ||||| Sbjct 7059 CTTCCAATGAGTCTCTTGACATCAAAAACTGTGTTTTCAGGGTTGGAGGTAAGTTGGTGT 7118 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTA---AACGCGACGTACGATGGG 8050 || || || || || ||||| ||||| | ||||||| || || || || || || Sbjct 7119 TTGGCAGCATCTCCAATAAGCCGTTC---ACCTTCCGTAGTGAATGCCACATAAGAAGGC 7175 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 || | | ||| || || ||||| || || ||||| || Sbjct 7176 GTAATCCTATTTCCCTGATCGTTGGCGATTATTTCCAC 7213 Score = 122 bits (134), Expect = 1e-22 Identities = 327/496 (66%), Gaps = 8/496 (2%) Strand=Plus/Plus Query 6667 TTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAA 6726 |||||| | | |||||||| || |||| |||| || || ||| |||| | ||||| Sbjct 5804 TTTACCTGTTCCTTTATCTTCCGCTTTTACTCTCAATATTCCGTTTACATCGATTTCGAA 5863 Query 6727 CCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGT 6786 | || | ||||||||| ||| | ||||| | |||||||| || ||||||||| | Sbjct 5864 GGTAACTTCAATTTGTGGAACACCACGTGGTGCTGGAGGAATACCAGTCAAATCAAATTT 5923 Query 6787 ACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCAC 6846 |||||||||| ||| | | | | | |||||||| || | |||| ||| || || Sbjct 5924 ACCAAGTAAATGGTTGAACTTTGTCATTGCTCGTTCACCCTCGAATACTTGAATGGTTAC 5983 Query 6847 CGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGT 6906 | |||||| ||||| || || || || ||||| ||||| | |||||| || Sbjct 5984 AGTAGGTTGGTTATCGGCAGCTGTAGAAAATATTTGCGACTTCTTTGTTGGAATAACTGT 6043 Query 6907 ATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGG 6966 |||||| || || | ||||| | |||||| | ||||| | || || | || || Sbjct 6044 ATTTCTTGGGATGAGTTTTGTCATTACACCACCAACTGTTTCAATACCCAGTGTCAAGGG 6103 Query 6967 TGTCACGTCCAAGAGTAACAGGTCTTGAACAG-ATTCGTTCCCTTCACCCGTTAAGATGG 7025 || ||| || |||| | ||| ||| || || |||| || | Sbjct 6104 ACAAACATCC---AGCAACACAACACCTCCAGTATT--TT--CTACACCACCTATAACAC 6156 Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085 | | || || | || || || ||||| || || || || |||| | | || ||| Sbjct 6157 CACCCTGTACAGCTGCACCATAAGCGACTGCTTCGTCAGGATTAACTCCTCTGTTTGGTT 6216 Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145 |||| |||| ||| ||||| | | |||||| | |||||||||||| || ||||||| Sbjct 6217 CTTTGCCGTCAAAGAAATCCTGCAGTAGTTGTTGGACTTTCGGGATTCGAGTGGATCCAC 6276 Query 7146 CGACCAAAACGATTTC 7161 | || || || || || Sbjct 6277 CAACTAAGACAATCTC 6292 >seq28879 Length=6601 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 105868 GCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGG 105927 ||||| ||||||| |||||| ||||| || ||||||||||| ||||| | | ||||||| Sbjct 3385 GCACATTCTTTTAATGTATCATAAATCCCCTCGATACTATCATCCTTCATTGTAATCAGG 3326 Query 105928 AAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATG 105986 || || ||| | ||||||| | ||||| ||||||||||| || || || | ||||| Sbjct 3325 AAGCAACTTGAAAGTTGTGGTTTTGGTGTTCCAGCATTGAAAAGCGTCGGAGAAGCATG 3267 >seq7169 Length=15740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 115363 TGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAACCCT 115422 |||| || ||||||| ||||||||||||||||| || | | || || | | ||| Sbjct 6399 TGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCT 6458 Query 115423 CTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACAC 115482 | ||| |||| |||||| ||||| ||||||||| ||||| || | ||| || || Sbjct 6459 CGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCT 6518 Query 115483 GCAAAGGCTAATAAACGTTCAGCAAA 115508 ||||| || | || |||||| ||||| Sbjct 6519 GCAAAAGCGACTAGACGTTCTGCAAA 6544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633637308369960